1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgttcggagccatgagtttatttccttttgcttcttagggtttctagaattttatatgtgcttcatcaatccatcatcaggcaacttgtcttg...
species | Zea mays |
transcript | GRMZM2G031435_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|93284231|gb|EB676495.1|EB676495
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|71448351|gb|DR829401.1|DR829401
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|71439137|gb|DR820187.1|DR820187
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGGTA-GGCTGGAAGGEST: gi|71766612|gb|DR964549.1|DR964549
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTG-TAAGGCTGGAAGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|19057494|gb|BM736161.1|BM736161
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|78103952|gb|DV522370.1|DV522370
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|71430075|gb|DR811125.1|DR811125
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|76288945|gb|DV028513.1|DV028513
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|76280780|gb|DV020348.1|DV020348
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|87152319|gb|DY397108.1|DY397108
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|74232090|gb|DT640004.1|DT640004
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|101383931|gb|EB814020.1|EB814020
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGGEST: gi|22491044|gb|BU050967.1|BU050967
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
EST: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT GTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
genomic: GTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgt ... ctttttccagGTAATGAAGTGCAAGGTGGTAGCACCTATGTCCACTGTAAGGCTGGAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATTgtaagtatgttcggagccatgagtttatttccttttgcttcttagggtttctagaattttatatgtgcttcatcaatccatcatcaggcaacttgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA