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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccataatttcacattttatattgaatatcagatgctactgttttgtgtttgcttacccttaattttgtgtcgtttttaattcatgaagtacttga...

Basic information

species Zea mays
transcript GRMZM2G030902_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030902_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 3
GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccataatttcacattttatattgaatatcagatgctac-tgttttgtgtttgct---tacccttaat-tttgtgtcgtttttaattcatgaagtacttga
||||| || ||||| |||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    ||||||| |||    ||   |||| |||||| |  |  |||||||||  |   | || ||||  |||| |  |  | |  ||| ||   |      
GTTCTTGGAATCCCATGGGATGTGGACACTGAAGGATTAAGAGAGTACATGGGCAAGTTTGGACCCCTAGATGATTGCGTCGTCATGAAGgtttgtagcaatttcatattcagaataagatattagatgccatattctttgtgtttattacatgccattaagatttgaggagaatatgtttcttgtcttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211347523|gb|FL007072.1|FL007072
EST:     AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGGAAG                         GAGCGGTCTTCTGGG
genomic: AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATG-AAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGG
EST: gi|31664299|gb|CD573024.1|CD573024
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345133|gb|FL007069.1|FL007069
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345131|gb|FL007067.1|FL007067
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345128|gb|FL007064.1|FL007064
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345132|gb|FL007068.1|FL007068
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|6564152|gb|AW231774.1|AW231774
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345130|gb|FL007066.1|FL007066
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGG
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGG
EST: gi|211345122|gb|FL007058.1|FL007058
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTC
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTC
EST: gi|211345125|gb|FL007061.1|FL007061
EST:     AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATTGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATC
genomic: AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCAT-GAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATC
EST: gi|211345127|gb|FL007063.1|FL007063
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCT
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCT
EST: gi|211345135|gb|FL007071.1|FL007071
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAA                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345129|gb|FL007065.1|FL007065
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAACGGCCTTCTGGGCGATCTCGTGGGCTTGGCTATGTACCTTTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA