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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccataatttcacattttatattgaatatcagatgctactgttttgtgtttgcttacccttaattttgtgtcgtttttaattcatgaagtacttga...

Basic information

species Zea mays
transcript GRMZM2G030902_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030902_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 3
GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccataatttcacattttatattgaatatcagatgctac-tgttttgtgtttgct---tacccttaat-tttgtgtcgtttttaattcatgaagtacttga
||||| || ||||| |||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    ||||||| |||    ||   |||| |||||| |  |  |||||||||  |   | || ||||  |||| |  |  | |  ||| ||   |      
GTTCTTGGAATCCCATGGGATGTGGACACTGAAGGATTAAGAGAGTACATGGGCAAGTTTGGACCCCTAGATGATTGCGTCGTCATGAAGgtttgtagcaatttcatattcagaataagatattagatgccatattctttgtgtttattacatgccattaagatttgaggagaatatgtttcttgtcttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211347523|gb|FL007072.1|FL007072
EST:     AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGGAAG                         GAGCGGTCTTCTGGG
genomic: AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATG-AAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGG
EST: gi|148936779|gb|EC880917.2|EC880917
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|149104347|gb|EE289792.2|EE289792
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|31664299|gb|CD573024.1|CD573024
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|22545757|gb|BU098131.1|BU098131
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|71769697|gb|DR967634.1|DR967634
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345125|gb|FL007061.1|FL007061
EST:     AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATTGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATC
genomic: AGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCAT-GAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATC
EST: gi|148955713|gb|EC901400.2|EC901400
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345133|gb|FL007069.1|FL007069
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|87156149|gb|DY400938.1|DY400938
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345132|gb|FL007068.1|FL007068
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|149096474|gb|EE182216.2|EE182216
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|149000018|gb|EE037116.2|EE037116
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345131|gb|FL007067.1|FL007067
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|6564152|gb|AW231774.1|AW231774
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|149104935|gb|EE290405.2|EE290405
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345130|gb|FL007066.1|FL007066
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGG
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGG
EST: gi|26558833|gb|CA831068.1|CA831068
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|22473110|gb|BU037590.1|BU037590
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|71304925|gb|DR788593.1|DR788593
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345135|gb|FL007071.1|FL007071
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAA                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345122|gb|FL007058.1|FL007058
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTC
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTC
EST: gi|31557986|gb|CD527198.1|CD527198
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211138007|gb|FL213712.1|FL213712
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345128|gb|FL007064.1|FL007064
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|32919564|gb|CF024376.1|CF024376
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|149080743|gb|EE169805.2|EE169805
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|21432115|gb|BQ547605.1|BQ547605
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|9952229|gb|BE638812.1|BE638812
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGTGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|13558465|gb|BG549821.1|BG549821
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345127|gb|FL007063.1|FL007063
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCT
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCT
EST: gi|60350487|gb|DN217460.1|DN217460
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211345129|gb|FL007065.1|FL007065
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAACGGCCTTCTGGGCGATCTCGTGGGCTTGGCTATGTACCTTTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA