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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCGCCCCAACGCCGGCCTAGTTCTCAGCACCACCGCCCGCTTCTACGCCGTCGTCCGCCCCCTCCGCGACAGCCTCCCAGCCGACTCCTGGACCTGGgtgagcgcatttgaactgcgcccctcccctccgccgcagcacccagcccccttatgccatcccgctggtctcaacag

Basic information

species Zea mays
transcript GRMZM2G030839_T07
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030839_T07 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g14830.1 (Oryza sativa), 5'ss of exon 2
GGAGCGCCCCAACGCCGGCCTAGTTCTCAGCACCACCGCCCGCTTCTACGCCGTCGTCCGCCCCCTCCGCGACAGCCTCCCAGCCGACTCCTGGACCTGGgtgagcgca----tttgaactgcgcccctcccctccgcc-gcagcaccc-----agcccccttatgccatcccgctggtctcaacag------
|||||| |||||||||||||| || |||||||||| ||| |||||||||||| |||||||||| |||||||||   |||     |||||||||| | ||||||||| |          | | | |       ||   |  | |||| |      |    |    | |  | |||     ||  ||        
GGAGCGGCCCAACGCCGGCCTCGTCCTCAGCACCAGCGCGCGCTTCTACGCCATCGTCCGCCCGCTCCGCGACGAGCTCAGCCACGACTCCTGGGCATGGgtgagccccgagccccagatttctcgaacaaactttactagtagcatcgcggagaattgctccttactctgccgagcacctgtaccatactag

upper sequence: GRMZM2G030839_T07 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g48160.1 (Oryza sativa), 5'ss of exon 3
GGAGCGCCCCAACGCCGGCCTAGTTCTCAGCACCACCGCCCGCTTCTACGCCGTCGTCCGCCCCCTCCGCGACAGCCT--CCCA-GCCGACTCCTGGACCTGGgtgagcgcatttgaactgcgcccctcccctccgccg--cagcacccagcccccttatg-----ccatcccgctggtctcaacag------------------------------
   |||||||||||||||||| || |||| ||||||||| ||||||||||||||||||| ||| | |||||||   ||  |||| | ||| |||||| | ||||||||| |     | |   |    |  |   | |     || | ||| | || | | |     | |  ||  |  |||     |                              
---GCGCCCCAACGCCGGCCTCGTCCTCATCACCACCGCTCGCTTCTACGCCGTCGTCCTCCCGCCCCGCGACCAGCTCACCCACGACGAATCCTGGGCATGGgtgagcccccgaaaccccagattatttctcacacaatttagtagccatcaccatcagggagaactaatcc-ttactctgtgtggtacctgtcccatatggtaaattgctactag