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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCATTGGTCCAGAAATGTTTGAAGGGGAGGCTCTTGGTTTGAAGGCAATGTATGACACAAAGTCGATCCGTGTTCCGTTGCCATACAAGgtgagagaagtggcagatgctagaatatatatagctgcatatatggaacacattaacacacacgatggaagtacttatatagtgatgcagaaacctccag...

Basic information

species Zea mays
transcript GRMZM2G030299_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030299_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g02640.1 (Oryza sativa), 5'ss of exon 3
CCGCATTGGTCCAGAAATGTTTGAAGGGGAGGCTCTTGGTTTGAAGGCAATGTATGACACAAAGTCGATCCGTGTTCCGTTGCCATACAAGgtgagagaagtggcagatgctagaatatatatagctgcatatatggaacacattaacacacacgatggaagtacttatatagtgatgcagaaacctccag----
 || |||||||||   |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||| ||  |||         ||| |||| | |  | |   || | ||| || ||  |   ||| | ||    |  ||   || ||    ||||     |||    
GCGTATTGGTCCATCTATGTTTGAAGGGGAGGCTCTTGGTTTGAAGGCCATGTATGACACAAATTCAATCCGTGTTCCATTGCCATACAAGgttagtaaaggtttttcctcta-aataaaaaggggttagtaaa-ggatcagatgcatgaacaag-tgtgtttttttccgtaatg-catagaacagcacagtaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94475550|gb|EB704508.1|EB704508
EST:     TGAAGGCAATGTATGACACAAAGTCGATCCGTGTTCCGTTGCCATACGAG                         GGTGGTTCTTTACCTACAGGTGGTTCTTTTATCATCATGGAGTTTATTGAA
genomic: TGAAGGCAATGTATGACACAAAGTCGATCCGTGTTCCGTTGCCATACAAGgtgagagaag ... gttagtatagGTTGGTTCTTTACCTACAGGTGGTTCTTTTATCATCATGGAGTTTATTGAA
EST: gi|149014134|gb|EE043676.2|EE043676
EST:     TGAAGGCAATGTATGACACAAAGTCGATCCGTGTTCCGTTGCCATACAAG                         GTTGGTTCTTTACCTACAGGTGGTTCTTTTATCATCATGGAGTTTATTGAA
genomic: TGAAGGCAATGTATGACACAAAGTCGATCCGTGTTCCGTTGCCATACAAGgtgagagaag ... gttagtatagGTTGGTTCTTTACCTACAGGTGGTTCTTTTATCATCATGGAGTTTATTGAA