Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGTTAACAAAATGAAAGACGATGCCATGAAGGAACTTCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaaatacagcatacacaaatttcaatgttctttttcttaaaagtttctacaagtcaatgtctcaagttactaaggccccgtttggtttggggt...

Basic information

species Zea mays
transcript GRMZM2G030167_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 3
TCTAGTTAACAAAATGAAAGACGATGCCATGAAGGAACTTCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttg-gccaaatacagcatacacaaatttcaatgttctttttcttaaaagtttctacaagtcaatgtctcaagttactaagg-ccccgtttggtttggggt
| | |||||    |||||||| ||||| |  ||| |||| || | |||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||    ||||   | |||||  |  | | |  ||||| | | | ||   || |  |   | ||   ||   | | |  || ||||    || ||     
TTTGGTTAATTCCATGAAAGAGGATGCTACAAAGCAACTCCTGCGTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGAACTCGTCGTTCAGgtttgtatgaaatgttgaatacatcatctgctagattcttatccattaagcctttttgag--cgatccttctgataattgtggaccccaagagggtttcacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6095442|gb|AW120109.1|AW120109
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|37377401|gb|CF625300.1|CF625300
EST:     ACCACCATGAATACAAG-ACCTTTTGACAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: ACCACCATGAATACAAGAACCTTTTGA-AAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211276379|gb|FL349487.1|FL349487
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAA-GAGCCAGCAGTATTGCTCCGTTGCCGCA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCA
EST: gi|5846896|gb|AI999979.1|AI999979
EST:     CAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: CAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|9952749|gb|BE639212.1|BE639212
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAG
EST: gi|211364769|gb|FL332271.1|FL332271
EST:     CCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGA
genomic: CCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATT-CAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGA
EST: gi|211035351|gb|FL313985.1|FL313985
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTTGAAAGAG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTT-GAAAGAG
EST: gi|211420284|gb|FL357504.1|FL357504
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTT-GAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGA
EST: gi|8577252|gb|BE129889.1|BE129889
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|60352605|gb|DN219578.1|DN219578
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GTTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGATCTGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211232954|gb|FL335277.1|FL335277
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTG
EST: gi|148991268|gb|EE032738.2|EE032738
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|33101816|gb|CF061776.1|CF061776
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211104389|gb|FL367376.1|FL367376
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTAT
EST: gi|211237184|gb|FL328606.1|FL328606
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAG
EST: gi|211305629|gb|FL309428.1|FL309428
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTG
EST: gi|60343554|gb|DN210527.1|DN210527
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|32865148|gb|CF004830.1|CF004830
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211412071|gb|FL337699.1|FL337699
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|32865312|gb|CF004994.1|CF004994
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|148951970|gb|EC897749.2|EC897749
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|4885978|gb|AI677098.1|AI677098
EST:     GCC-CAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211531330|gb|FL321015.1|FL321015
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCCCAAGGA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGG-TTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGA
EST: gi|211171811|gb|FL323268.1|FL323268
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGA
EST: gi|149037738|gb|EE155400.2|EE155400
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|32865147|gb|CF004829.1|CF004829
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCACCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211444767|gb|FL341645.1|FL341645
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|67023589|gb|CO452338.1|CO452338
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|149078560|gb|EE167343.2|EE167343
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCGG                         GGTTTGCTCCGTTT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTT
EST: gi|91869925|gb|EB400611.1|EB400611
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|6012480|gb|AW061917.1|AW061917
EST:     TTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAA
genomic: TTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211462573|gb|FL333678.1|FL333678
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAA-GACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCA
EST: gi|78087840|gb|DV516233.1|DV516233
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|32830299|gb|CD969977.1|CD969977
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211525292|gb|FL320506.1|FL320506
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTG
EST: gi|33101795|gb|CF061755.1|CF061755
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|111145880|gb|EE258157.1|EE258157
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|149086619|gb|EE176162.2|EE176162
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|149100210|gb|EE186272.2|EE186272
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|60355784|gb|DN222757.1|DN222757
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211532059|gb|FL347523.1|FL347523
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTG
EST: gi|60350601|gb|DN217574.1|DN217574
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|78025737|gb|DV494124.1|DV494124
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|60356696|gb|DN223669.1|DN223669
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|5922291|gb|AW055580.1|AW055580
EST:     CTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: CTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|5325086|gb|AI783277.1|AI783277
EST:     CAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: CAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|60349595|gb|DN216568.1|DN216568
EST:     ATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: ATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|60356207|gb|DN223180.1|DN223180
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|9952746|gb|BE639209.1|BE639209
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|8930347|gb|BE225111.1|BE225111
EST:     ACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: ACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|213173804|gb|FM191831.1|FM191831
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|149100211|gb|EE186273.2|EE186273
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|61118335|gb|DN559296.1|DN559296
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|211126002|gb|FL346642.1|FL346642
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAG
EST: gi|6194665|gb|AW146769.1|AW146769
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|149086621|gb|EE176163.2|EE176163
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|8930350|gb|BE225114.1|BE225114
EST:     CTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: CTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
EST: gi|32847803|gb|CD987484.1|CD987484
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAG                         GGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 390

TCTAGTTAACAAAATGAAAGACGATGCCATGAAGGAACTTCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGATGATCACCATCATGTGGAATCAGTGCTGCATTCAGCAAAGCATGAGTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 739

TCTAGTTAACAAAATGAAAGACGATGCCATGAAGGAACTTCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGATGATCACCATCATGTGGAATCAGTGCTGCATTCAGCAAAGCATGAGTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 623

TCTAGTTAACAAAATGAAAGACGATGCCATGAAGGAACTTCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGATGATCACCATCATGTGGAATCAGTGCTGCATTCAGCAAAGCATGAGTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 435

TCTAGTTAACAAAATGAAAGACGATGCCATGAAGGAACTTCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaa ... tcaaatccagGGTTTGCTCCGTTTGAAAGAGCCAGCAGTATTGCTCCGTTGCCGCAAGGATGATCACCATCATGTGGAATCAGTGCTGCATTCAGCAAAGCATGAGTATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTAGTTAACAAAATGAAAGACGATGCCATGAAGGAACTTCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGACCTAATCATTCAGgtttggccaaatacagcatacacaaatttcaatgttctttttcttaaaagtttctacaagtcaatgtctcaagttactaaggccccgtttggtttggggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC