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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTTGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAGgtttgtcccgatggaaaggcttggttgctttgtgcatgcatttttttttcctttcgactgatttgttcttgctttttttccccccgttggtag

Basic information

species Zea mays
transcript GRMZM2G029824_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32824642|gb|CD964364.1|CD964364
EST:     TCTTGTTCTCGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAG                         AACAAGGAGGCGACGGACCGCGTTGCCAGGATATCCCTGTACTGCTGGATG
genomic: TCTTGTTCTTGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAGgtttgtcccg ... ccgttggtagAACAAGGAGGCGACGGACCGCGTTGCCAGGTTATCCCTGTACTGCTGGATG
EST: gi|32824901|gb|CD964623.1|CD964623
EST:     TCTTGTTCTCGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAG                         AACAAGGAGGCGACGGACCGCGTTGCCAGGATATCCCTGTACTGCTGGATG
genomic: TCTTGTTCTTGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAGgtttgtcccg ... ccgttggtagAACAAGGAGGCGACGGACCGCGTTGCCAGGTTATCCCTGTACTGCTGGATG
EST: gi|76010688|gb|DT937858.1|DT937858
EST:     TCTTGTTCTTGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAG                         AACAAGGAGGCGACGGACCGCGTTGCCAGGTTATCCCTGTACTGCTGGATG
genomic: TCTTGTTCTTGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAGgtttgtcccg ... ccgttggtagAACAAGGAGGCGACGGACCGCGTTGCCAGGTTATCCCTGTACTGCTGGATG
EST: gi|32791123|gb|CD943359.1|CD943359
EST:     TCTTGTTCTCGGATCAGTTTGTGTGGCTCGGACGAACGGNGATCGTCAAG                         AACAAGGAGGCGACGGACCGCGTTGCCAGGATATCCCTGTACTGCTGGATG
genomic: TCTTGTTCTTGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAGgtttgtcccg ... ccgttggtagAACAAGGAGGCGACGGACCGCGTTGCCAGGTTATCCCTGTACTGCTGGATG