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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttttctcggataatgtgctttgttggcatttaggggagcaaaagcagtatgttaatcagttgagatcagatcctgttgtctgaatattcttgc...

Basic information

species Zea mays
transcript GRMZM2G029566_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g10310.3 (Oryza sativa), 5'ss of exon 3
TCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgta-tgtgttttctcggataatgtgctttgttggcatttaggggagcaaaagcagtatgttaatcagttgagatcagatcctgttgtctgaatattcttgc
||||||| ||||  ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| ||| |||||| | |  |||   | || ||  | ||  |              ||    |  | |    |    ||  |  ||  | |  |       
TCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtattttcttg-accatgccttgtgctgagacttgagacttgggttttgacataaacactaatctgcaatgtatgtt--tgcttcatcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211126134|gb|FL125776.1|FL125776
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: gi|211459280|gb|FL072386.1|FL072386
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: gi|32851376|gb|CD991057.1|CD991057
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: gi|211459281|gb|FL072387.1|FL072387
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGT
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGT
EST: gi|211459279|gb|FL072385.1|FL072385
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC