1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTAGTTGATCTTACTTGTGGAGCACTTGCTCGAATCATTGGAGGAAAAACACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAGgtaagagtaccacttgaatagtcgtgtataggaaaaggttctcttgatctccctgagtacaattcccccatctggagctaaaaaaagacagatttcattaacacaaactcagcttgataaagtgaatcatttccttttagatgttgacacatttgacacctatttgccag
species | Zea mays |
transcript | GRMZM2G029307_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAG GAAGAGAAACTGGAGCCACTAAAAAATTTAAATGATGATCCTACAATTCGTEST: gi|211128008|gb|FL128205.1|FL128205
genomic: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAGgtaagagtac ... tatttgccagGAAGAGAAACTGGAGCCACTAAAAAATTTAAATGATGATCCTACAATTCGT
EST: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAG GAAGAGAAACTGGAGCCACTAAAAAATTTAAATGATGATCCTACAATTCGTEST: gi|32935922|gb|CF040734.1|CF040734
genomic: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAGgtaagagtac ... tatttgccagGAAGAGAAACTGGAGCCACTAAAAAATTTAAATGATGATCCTACAATTCGT
EST: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAG GAAGAGAAACTGGAGCCCCTAAAAAATTTAAATGATGATCTTACAATTCGTEST: gi|32935467|gb|CF040279.1|CF040279
genomic: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAGgtaagagtac ... tatttgccagGAAGAGAAACTGGAGCCACTAAAAAATTTAAATGATGATCCTACAATTCGT
EST: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAG GAAGAGAAGCTGGAGCCACTAAAAA-TTTAAATGATGATCTTACAATTCGT
genomic: CACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAGgtaagagtac ... tatttgccagGAAGAGAAACTGGAGCCACTAAAAAATTTAAATGATGATCCTACAATTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAGTTGATCTTACTTGTGGAGCACTTGCTCGAATCATTGGAGGAAAAACACCTGATGAAGTTAGAGATATTTTCCATTTACCAGATGACTTAACAGAGgtaagagtaccacttgaatagtcgtgtataggaaaaggttctcttgatctccctgagtacaattcccccatctggagctaaaaaaagacagatttcattaacacaaactcagcttgataaagtgaatcatttccttttagatgttgacacatttgacacctatttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG