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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGCATACATTATGAGAGATATGAAGAAGGAAAAGGAGCTAGGTTTTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctctaatttcttatctatgaagagtccaattgaaatgagaaaaaagaatagtgatagaggacagttgtattctcttttatgtgaagagaaaactcaacatttacattatgcttacgttttctagtatggtcataatgttacctgaggtttccaaaaattcgtttcag

Basic information

species Zea mays
transcript GRMZM2G028685_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028685_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g71256.1 (Oryza sativa), 5'ss of exon 3
TGAGAAGGCATACATTATGAGAGATATGAAGAAGGAAAAGGAGCTAGGTTTTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctctaatttcttatctatgaagagtccaattgaaatgagaaaaaagaatagtgatagaggacagttgtattctcttttatgtgaagagaaaactcaacatttacattatgcttacgttttctagtatggtcataatgttacctgaggtttccaaaaattcgtttcag
||||||   ||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||  |||||||||| ||| |  ||||  |  | || ||| ||| || |||| | |  |||  ||||||||| ||| | |||  ||    | || || |||| ||||  |||  |||||| |  | ||| |   || |||||  |  |       |    |  | ||||||||| |   ||     ||||   | |||
TGAGAAAAGATACATTCTGAGGGATATAAAGAAGGAAAAGGAGCTAGGCTTTAGCATGCCTGTCTCACTAAGCCGAGCTTGCAAAAAACCTTTGTTAGAGgtgatattttagtttattagct-tgaaaaatataatcaaaatgagaacaaatactagcaatttttggcaattatattatcttg-atgccaagagatactttaactt---cagtatgccaaaat------atgaaatgtttatgttacctaaaaatttattgaatt---tccag

upper sequence: GRMZM2G028685_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA15G10570.1 (Glycine max), 5'ss of exon 6
TGAGAAGGCATACATTATGAGAGATATGAAGAAGGAAAAGGAGCTAGGTTTTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctctaatttcttatctatgaagagtcca-attgaaatgagaaaaaagaatagtgatagaggacagttgtattctcttttatgtgaagagaaaactcaacatttacattatgcttacgttttctagtatggtcataatgttacctgaggtttccaaaaattcgtttcag
|||||     |||||  |||| |||  ||| |||||||||||| ||||||| |||||||| ||||||||    ||  |  ||||   | |||           |   |  ||  |  ||| | || |   | || | ||||| ||| |  ||  ||  | ||   ||     || ||  | ||| |   |  |  |      || | | |  || |                                                          
TGAGAGAAATTACATATTGAGGGATGCGAAAAAGGAAAAGGAGTTAGGTTTCAGCATGCCAGTCTCACT----AGCACGTGCAATCCAGCATC---------CTCTTTTAAAGgtaatatatgtggaacatacatagtgaaaggagtagtaa--atcataatcttgggataatggatg-tgtttcaccagttggaattgtaaaaaagtcattttgt----------------------------------------------------------

upper sequence: GRMZM2G028685_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA03G36660.1 (Glycine max), 5'ss of exon 6
TGAGAAGGCATACATTATGAGAGATATGAAGAAGGAAAAGGAGCTAGGTTTTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctctaatttcttatctatgaagagtccaa-ttgaaatgagaaaaa-agaatagtgatagaggacagttgtattctcttttatgtgaagagaaaactcaacatttacattatgcttacgttttctagtatggtcataatgttacctgaggtttccaaaaattcgtttcag
||||||    |||||| |||| |||||||| |||||||||||  |||| |||| ||||||||| || |||    ||||  |  | || ||  | ||  |||| ||| | ||    ||| | |  |    | |||| ||   |||     |  | | | |   || |     ||||  | |   || |                                                                                        
TGAGAAAAATTACATTCTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTTAACATGCCTGTTTCTCTTGCTCGAGCAAGACAGAAGCCGCTCCTAAAGgtattcttgtataaacttttgttagttatgcccaaattcttatgcttccatcatatttgccttaaaatctggttgcttgcctcttcag---------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71311783|gb|DR792346.1|DR792346
EST:     TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAG                         GGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
genomic: TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctct ... ttcgtttcagGGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
EST: gi|60339789|gb|DN206762.1|DN206762
EST:     AAAAACCATTGCTTCAG                         GGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTGGCAAGGAGCTTCTG
genomic: AAAAACCATTGCTTCAGgttttcctct ... ttcgtttcagGGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
EST: gi|101383529|gb|EB813820.1|EB813820
EST:     TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAG                         GGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
genomic: TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctct ... ttcgtttcagGGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
EST: gi|60343103|gb|DN210076.1|DN210076
EST:     TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAG                         GGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
genomic: TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctct ... ttcgtttcagGGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
EST: gi|60350264|gb|DN217237.1|DN217237
EST:     TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAG                         GGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG
genomic: TTAGCATGCCTGTCTCACTTAGCAGAGCCCGCAAAAAACCATTGCTTCAGgttttcctct ... ttcgtttcagGGTAGAAGAGTATTAATCACACCAAACGCCAAGCCTAGCAAGGAGCTTCTG