1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatgttcttggttctcaaatgcttctcatgatgactgcttttgtttctttgtcaccgtaagagatataaaccatcatttgcaatctaatgtacc...
species | Zea mays |
transcript | GRMZM2G028369_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATEST: gi|149067525|gb|EE157731.2|EE157731
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGAT
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|71449541|gb|DR830591.1|DR830591
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|148987695|gb|EE031582.2|EE031582
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|91872761|gb|EB402718.1|EB402718
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|60337916|gb|DN204889.1|DN204889
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACNTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|78104614|gb|DV523032.1|DV523032
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|71447644|gb|DR828694.1|DR828694
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|71763787|gb|DR961724.1|DR961724
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: CTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|89764470|gb|DY691264.1|DY691264
genomic: CTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatg ... ctttgcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTCCTGAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAGTACCCAAGGgtaatgcatgttcttggttctcaaatgcttctcatgatgactgcttttgtttctttgtcaccgtaagagatataaaccatcatttgcaatctaatgtacc
- - - - - - - - - - - - - - - - - - - - - GAGGAT