1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCCGACTCCATGCTCTACGGCCGTGGAGGTGACCCTAATGGCGCGCCACAACCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttgctgccgaatccaagtatcactgttcccttgccacctccgttggttattgatgtgtcaatggctcaattgcttgtttctggtgtgattgcag
species | Zea mays |
transcript | GRMZM2G028353_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATG GTCGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGCEST: gi|211539098|gb|FL044734.1|FL044734
genomic: AACCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttgc ... gtgattgcagGTCGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGC
EST: ACTTTTTCAGCTCACCCCCAAATGTTC-ACTCCTCACCAACGGGCAGATG GTCGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTT
genomic: ACCTTTCCAGCTCAACCCCAA-TGTTCCACTCCTCACCAACGGGCAGATGgtactgttgc ... gtgattgcagGTCGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGACTCCATGCTCTACGGCCGTGGAGGTGACCCTAATGGCGCGCCACAACCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttgctgccgaatccaagtatcactgttcccttgccacctccgttggttattgatgtgtcaatggctcaattgcttgtttctggtgtgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG