1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGTGGTTCATCCTCTGAAGGTTTCTCTGGAGGATTTGTACAATGGCACATCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatctgaatccacaacacaaggatgccaaaaactcaattacaatatgctttctatattagattcttaggatctgattgtgtgcttgtaatcgtgcag
species | Zea mays |
transcript | GRMZM2G028218_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|67030348|gb|CO459097.1|CO459097
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|31360427|gb|CD444784.1|CD444784
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|5566927|gb|AI881838.1|AI881838
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|211088782|gb|FK991008.1|FK991008
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: CAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTNCCA-GTGCAATGG TAAGGGTTCCAAGTTTGGAGCTEST: gi|22521136|gb|BU079947.1|BU079947
genomic: CAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCT-CCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCT
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTEST: gi|9743001|gb|BE519149.1|BE519149
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTT
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|211531690|gb|FK990937.1|FK990937
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTTTGGAGCTTTCGTCGAGGTTGTG-TGGGGTTGGTCAAEST: gi|67035410|gb|CO463943.1|CO463943
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTT-CGTCGAGGT-GTGCTGG--TTG-TCAA
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|211531686|gb|FK990933.1|FK990933
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCNAGTGCAATGG TAAGGGTTCCAAGTTTTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTEST: gi|51592714|gb|CV071860.1|CV071860
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCT-GGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTT
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|5268675|gb|AI770639.1|AI770639
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|32845319|gb|CD985000.1|CD985000
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAAAAGCTCTCTCTGTCCCGCAATGTCCTTTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|87155560|gb|DY400349.1|DY400349
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|28361755|gb|CB240111.1|CB240111
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|26559272|gb|CA831507.1|CA831507
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|211091233|gb|FK991021.1|FK991021
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: CAAAGAAGCTCTCTCTGTCCCCGCA-TGTCCTCTGCTCCA-GTGCAATGG TAAGGGTTCCAAGTTTGGAGCTTCCTCGAGGGG-GCTGGGTGTCAAGGTTCEST: gi|67038376|gb|CO464706.1|CO464706
genomic: CAAAGAAGCTCTCTCTGTCCC-GCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|7162265|gb|AW519872.1|AW519872
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|211534686|gb|FK990945.1|FK990945
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTTTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|5268935|gb|AI770899.1|AI770899
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|28361546|gb|CB239902.1|CB239902
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|5555500|gb|AI881451.1|AI881451
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|32836749|gb|CD976427.1|CD976427
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAAAAGCTCTCTCTGTCCCGCAATGTCCTTTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCEST: gi|8368444|gb|BE051389.1|BE051389
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGEST: gi|211540708|gb|FK990973.1|FK990973
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAG
EST: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCCAAGTTTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGTTCATCCTCTGAAGGTTTCTCTGGAGGATTTGTACAATGGCACATCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatctgaatccacaacacaaggatgccaaaaactcaattacaatatgctttctatattagattcttaggatctgattgtgtgcttgtaatcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC