1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGgtaagatagatggaccgaccgaccgatcggggtcgtcttgctgctcgatccctcctccttccgctctcgccggcaccgctcgtacatggcatggcggcgg...
species | Zea mays |
transcript | GRMZM2G028041_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCATTTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGTTCGCCG ATGGTAAATCAGAAGGTGTGGGCTCTTCTGAAGATGACATGGACCCGAATGEST: gi|211475114|gb|FL216717.1|FL216717
genomic: CTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGgtaagataga ... ttgtctgcagATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATG
EST: CTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCG ATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATGEST: gi|31910085|gb|CD651247.1|CD651247
genomic: CTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGgtaagataga ... ttgtctgcagATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATG
EST: CTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCG ATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATGEST: gi|60341856|gb|DN208829.1|DN208829
genomic: CTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGgtaagataga ... ttgtctgcagATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATG
EST: GCGCCTCTCGCTCGCCG ATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATGEST: gi|18661474|gb|BM501416.1|BM501416
genomic: GCGCCTCTCGCTCGCCGgtaagataga ... ttgtctgcagATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATG
EST: GCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCG ATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATGEST: gi|71763226|gb|DR961163.1|DR961163
genomic: GCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGgtaagataga ... ttgtctgcagATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATG
EST: CTGCATCTCCGGCGGCAGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCG ATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATG
genomic: CTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGgtaagataga ... ttgtctgcagATGGTAAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGgtaagatagatggaccgaccgaccgatcggggtcgtcttgctgctcgatccctcctccttccgctctcgccggcaccgctcgtacatggcatggcggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctcc