1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGAGGATGACATTGAAGACATCCAAAAGgttgtggtttctccttgtgctctatattgtatgctaggctgtcatagatcaacttacccggtcgatactgtaggggcgtcccctacagttttcatggtaaaaaaaaacttacttggtcgatatgcaagttcctaaaggctttatttcctgttgcag
species | Zea mays |
transcript | GRMZM2G027756_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTACEST: gi|86473445|gb|DY239815.1|DY239815
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgtggttt ... cctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTAC
EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTACEST: gi|38502591|gb|CF972451.1|CF972451
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgtggttt ... cctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTAC
EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTACEST: gi|211214278|gb|FL374167.1|FL374167
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgtggttt ... cctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTAC
EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTACEST: gi|211379390|gb|FL388779.1|FL388779
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgtggttt ... cctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTAC
EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGEST: gi|211097652|gb|FL400841.1|FL400841
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgtggttt ... cctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCG
EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGCCGGTGCC-ATATATTACCGATTATTACEST: gi|74239667|gb|DT647581.1|DT647581
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgtggttt ... cctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTAC
EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGC
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgtggttt ... cctgttgcagGAGATATCTGTTTTGTCACAATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGATGACATTGAAGACATCCAAAAGgttgtggtttctccttgtgctctatattgtatgctaggctgtcatagatcaacttacccggtcgatactgtaggggcgtcccctacagttttcatggtaaaaaaaaacttacttggtcgatatgcaagttcctaaaggctttatttcctgttgcag
GAGGAT
- AGGATG
- - - - - TTGAAG
- - - - - - TGAAGA