1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCGATGGAATGGATGTTCTTGCTGTGAAGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtatttaagaaataattctgatttctatcatttcagttacatgaatgcatgcatatcttagagcacataatccatcacgtatggggttatgccata...
species | Zea mays |
transcript | GRMZM2G027627_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATC ATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAEST: gi|76019405|gb|DT946575.1|DT946575
genomic: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtattt ... tatgtttcagATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
EST: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATT ATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAEST: gi|91876001|gb|EB405958.1|EB405958
genomic: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtattt ... tatgtttcagATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
EST: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATT ATCTTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAEST: gi|211508254|gb|FL470985.1|FL470985
genomic: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtattt ... tatgtttcagATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
EST: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATT ATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAEST: gi|78117770|gb|DV536157.1|DV536157
genomic: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtattt ... tatgtttcagATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
EST: GCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATT ATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAEST: gi|31349079|gb|CD433436.1|CD433436
genomic: GCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtattt ... tatgtttcagATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
EST: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATT ATCCTCGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAEST: gi|211508252|gb|FL470983.1|FL470983
genomic: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtattt ... tatgtttcagATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
EST: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATT ATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
genomic: AGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtattt ... tatgtttcagATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGATGGAATGGATGTTCTTGCTGTGAAGCAAGCTTGCAAATTTGCCAAAGAACATGCCCTTGAAAATGGGCCAATTgtaagtatttaagaaataattctgatttctatcatttcagttacatgaatgcatgcatatcttagagcacataatccatcacgtatggggttatgccata
- - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaata