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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcacttgaactttgaattga...

Basic information

species Zea mays
transcript GRMZM2G027282_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatc-aagcacttgaactttgaattga
||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||| | |||   |  | | || | || |       |||||  |  ||         |   |  |  ||| |     | ||   |     | |
AATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCGATCTGGATTCACAAAGGAAAGGAAAATGCGTTGTTTTGAAGACATCCACAAGACAAgtaagtcaacttacttgacggtcatct-gctacctttctgatgaatcattaaacaagcagtcaagttcttacttgatctatattttggagactcatgataa

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgca-tgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcacttgaactttgaattga-
||| || || || ||||| || |||||||||||| | ||||| ||||| ||||| ||||||||||||||||||||||| || |||||||| ||  |||| || |  || ||   | |  ||||    | |     | |   |  ||   | | || |   ||   |   |   | | | || |||  | |  || ||     
AATAAATCCAGAAGATGAAGCAGAAGAAGATGGTTCCAACATTGATCTTGACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGgtgacaaagctgataatttaattaagattgtttcttgtcttcaatagttttttttgaaactgcaaaatgaatattattaaaacacaagga--ttaaaccaca

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 1
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcac---ttgaactttgaattga--
 ||||| || || ||||| |||||||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||  |||| || |  ||  |   ||     || || |   || | | |       | ||| |  | ||      | | || |  || |||      |   |  || ||| |   
TATGAATCCAGAAGATGAAGCTGAAGAAGATGGGGCCAACATTGATCTTGACTCTCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCCACTCGACAGgtga-caatttcatat----cttttggacagaaatttcatgtcctccctatttcgatttccagtgttactgtttcattaagattgtttcttatctttaatagtgt

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaa-gtaaacttgcatgaaatttctgtagccaact-atgaacct-tatcatatattaactttgtcc-atcaatggtca--atcaagcacttgaactttgaattga--------------------------------------------------------------
||||||||| || || || ||||||||||||||||| || || ||||| |||||||||||||| ||||| |||||||| || ||||| || ||  |||| || |  |  ||| | ||    ||  | | | || || |||  ||| |||||||  ||||  ||||   ||   |  |    ||      |||   |||| ||                                                                  
AATGAACCCGGAAGACGAAGCTGAAGAAGATGGTGCCAATATTGATCTTGACTCACAAAGGAAGGGAAAGTGTGTTGTGCTAAAGACTTCTACTCGACAGgtgacatggactaggat----ttcatattgtcatctgatgttcctatatcatagtttaagattgttttatttgttatagttattgttatcttatgcttttaacgaggacaagctcttagtacatttttcggtaaccttgagcttaataatgttttcttttgactgcag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaa--------gtaaacttgcatgaa---atttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaa-tcaagcacttgaactttgaattga--
||||||||| || || || ||||||||||||||||| || || ||||| |||||||||||||| ||||| |||||||| || ||||| || ||  |||| || |         | |  |   || |    |||  | |||| |   |     || |  | |     || |  | | | |||  | |  | ||  |  |   ||||  | ||   
AATGAACCCAGAAGACGAAGCTGAAGAAGATGGTGCCAATATTGATCTTGACTCACAAAGGAAGGGAAAGTGTGTTGTGCTAAAGACTTCTACTCGACAGgtgacatggacgatgatttcatattatcttattcttttagcgaggaaaagctctcagtacaatagtacatatttctttaatcttgagcttaattatgttttcttttgactgcag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcacttgaactttgaattga----------
 ||||| || || ||||| ||||| ||||||||||| || || ||||| ||||| ||| |||||||||||||||||||  |||| || || ||  | || || ||   |||| ||      |||| |||  |  | |   |   ||| | | ||   |||  |  |  |||    | |||  ||||    |||   |             
GATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgag---acttccaaacccattctttagata--tgttttctacatcttctcttccgtttcccgtttcatgtctgagcaaatacttttgttttcgttatgtggactgcag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaag----taaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcacttgaactt-tgaattga-------------
 ||||  || |||||||| || || |||||||| || || |||||||||||||| || ||||| ||||| ||||| ||||| || ||||| ||  | || || |     || |||   ||   |    |  ||  |  |    | ||  |     |  |||| || | |  | ||     |        ||| ||  ||  || |             
GATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCGATCTGGACTCTCAGAGGAAGGGAAAGTGTGTCGTTCTAAAAACATCAACTCGTCAGgtgaagttttagactcttatatcaccgttagagagattttcagaactagtggggaacaaactctgactactagtgtagtgtttgtataatgatctcatgggttaattatacttttcag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatata---ttaactttgtccatcaatggt-caatcaagcacttgaactttgaattga
||||||||| |||||||| || || ||||||||||| || || ||||| ||||| || ||||| ||||||||||||||| |||| ||||| ||  | || |||    | | |   |   |||    ||        ||    |||  |  ||   |||| |    |  | |||||     || || || || |     ||    
AATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTACACGCCAGgtacaccagcat-tttctcattaacatacatgtacttgtcttttacaaggtagagttaattggagcagtaaatggaattttcgaggacctgcagagcaaaa---

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 4
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaac--tttgtccatcaatggtcaatcaagcacttgaactttgaattga--
||||||||| || ||||| |||||||||||||| |||||| | ||||| ||||| ||||| |||||||||||||| ||  |||| || || ||  | || || |   | | |   |    |||||  |        ||    | | || ||| |||   || ||   |  ||  | | | ||  | | || |  |    |    
AATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTTGATCTTGACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagcatatcttt--tttcttcaatatcgcttgggtttaaccacatagtaagagttggtgatttcattattagtaaa--attagagccatcttctcttc

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaa-acttgcatgaaatttctgtagc--caac----tatgaaccttatcat--atattaactttgtccatcaatggtcaatcaagcacttgaactttgaattga---
  | || || || ||||| |||||||| |||||||||||  | ||| ||||||| ||||||| |||||| ||||| ||  |||||||||||||  | ||||||||| | |    |||  |  |||| | ||    ||    |    |  | |   |  |||| || ||  |  ||     ||    |   ||       ||||  |  |   
CGTCAATCCAGAAGATGAAGCTGAAGAGGATGGTGCTAATGTTGATTTGGACTCTCAAAGGAGAGGAAAGTGTGTCGTCTTGAAGACATCCACACGTCAAgtaagttatatccacattgagattctctggcagtgacgttttccacatgtgactgtcaatatgaatttaatttatatcatgttgcactgacatcatttttttgtgtgtacag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ15061 (Selaginella moellendorffii), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcacttgaactttgaattga
  | || ||||||||||| ||||| ||||| ||||| ||  ||||||| || || ||||| ||||||||||| || || || ||||| |||||  | |||||||||  | |        | |   || |  ||   |     ||  |  ||   |   || | |     | |                            
TGTAAATCCTGAGGATGAAGCTGAGGAAGACGGTGCCAATGTCGATCTCGATTCTCAAAGAAAAGGAAAATGCGTCGTGCTCAAGACCTCCACTCGCCAAgtaagtttattcattcaggagtgaagtgg--aagctttcttttttcctgatgccactgttcttctcgtgtag----------------------------

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ37626 (Selaginella moellendorffii), 5'ss of exon 3
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcacttgaactttgaattga
  | || ||||||||||| ||||| ||||| ||||| ||  ||||||| || || ||||| ||||||||||| || || || ||||| |||||  | |||||||||  | |        | |   || |  | || |    ||| |    |  |  |  ||| |  |    ||                           
TGTAAATCCTGAGGATGAAGCTGAGGAAGACGGTGCCAATGTCGATCTCGATTCTCAAAGAAAAGGAAAATGCGTCGTGCTCAAGACCTCCACTCGCCAAgtaagtttattcattcaggagtgaagtgga-agctct----cttttttcctgatgccactgttcgcctcgtgtag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|62550265|gb|DN830685.1|DN830685
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211379896|gb|FL296445.1|FL296445
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAA-GCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211382536|gb|FL296461.1|FL296461
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|148969904|gb|EE020805.2|EE020805
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|31355202|gb|CD439559.1|CD439559
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|5555343|gb|AI881294.1|AI881294
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211379901|gb|FL296450.1|FL296450
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211379910|gb|FL296459.1|FL296459
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|6527001|gb|AW216226.1|AW216226
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGNTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|61118361|gb|DN559322.1|DN559322
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|148967389|gb|EE018612.2|EE018612
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|60401214|gb|DN234021.1|DN234021
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211232255|gb|FL296426.1|FL296426
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGC
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGC
EST: gi|211382541|gb|FL296466.1|FL296466
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211234316|gb|FL296441.1|FL296441
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGA
EST: gi|211379906|gb|FL296455.1|FL296455
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211379904|gb|FL296453.1|FL296453
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|149100602|gb|EE186689.2|EE186689
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211234310|gb|FL296435.1|FL296435
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|26456187|gb|CA827770.1|CA827770
EST:     TCACAAAGGAAAGGGAAAATGGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCT
genomic: TCACAAAGGAAAGG-AAAATG-TGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCT
EST: gi|149077730|gb|EE166447.2|EE166447
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211232258|gb|FL296429.1|FL296429
EST:     CTCACAAAGGAAAGGAAAAATGTGTTGNTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGGTTAGTTGACCCCGATAAGCTAAAGCC
genomic: CTCACAAAGGAAAGGAAAA-TGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGG-TTAGTTGACCCCGATAAGCTAAAGCC
EST: gi|211232244|gb|FL296415.1|FL296415
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|20208194|gb|BQ134283.1|BQ134283
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|148979234|gb|EE026595.2|EE026595
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCCGATAAGCTAAAGCC
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCC-GATAAGCTAAAGCC
EST: gi|211379902|gb|FL296451.1|FL296451
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|71448750|gb|DR829800.1|DR829800
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211232252|gb|FL296423.1|FL296423
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGAT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGAT
EST: gi|74241540|gb|DT649454.1|DT649454
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211379908|gb|FL296457.1|FL296457
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|67041966|gb|CO468221.1|CO468221
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|498210|gb|T20358.1|T20358
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|26456217|gb|CA827800.1|CA827800
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211234308|gb|FL296433.1|FL296433
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCC
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCC
EST: gi|6056527|gb|AW090917.1|AW090917
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGNTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211234311|gb|FL296436.1|FL296436
EST:     ACTCACAAAGGAAACGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTG
EST: gi|211379900|gb|FL296449.1|FL296449
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211382539|gb|FL296464.1|FL296464
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGA
EST: gi|211234314|gb|FL296439.1|FL296439
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATT
EST: gi|211234318|gb|FL296443.1|FL296443
EST:     ACTCACAAAGGANAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|67017349|gb|CO446098.1|CO446098
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211232249|gb|FL296420.1|FL296420
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAG
EST: gi|148962495|gb|EE013359.2|EE013359
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211232253|gb|FL296424.1|FL296424
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211232257|gb|FL296428.1|FL296428
EST:     CTCACAAAGGAAAGGAAAAATGNGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGNAAATTTGGGGTTAGTTGACCCCGATAAGCTAAAG
genomic: CTCACAAAGGAAAGGAAAA-TGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAA-TT-GGG-TTAGTTGACCCCGATAAGCTAAAG
EST: gi|149089441|gb|EE178682.2|EE178682
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211379905|gb|FL296454.1|FL296454
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACC
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACC
EST: gi|211382535|gb|FL296460.1|FL296460
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|31355810|gb|CD440167.1|CD440167
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211382540|gb|FL296465.1|FL296465
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|148946788|gb|EC892057.2|EC892057
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211232246|gb|FL296417.1|FL296417
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCT
EST: gi|211232245|gb|FL296416.1|FL296416
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTTAATTGGGTTAGTTGACCCCCGATAAGCTAAAGC
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGT-AATTGGGTTAGTTGACCCC-GATAAGCTAAAGC
EST: gi|211379903|gb|FL296452.1|FL296452
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGAT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGAT
EST: gi|60395429|gb|DN228299.1|DN228299
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|18659139|gb|BM500175.1|BM500175
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAG
EST: gi|60352075|gb|DN219048.1|DN219048
EST:     AGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: AGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|5268468|gb|AI770432.1|AI770432
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTGAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAAAGCCT
EST: gi|211234309|gb|FL296434.1|FL296434
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAA                         ACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaac ... ttaactgcagACCATATTCCTTCCTGTAATTGGGTTAGTTGACCCCGATAAGCTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCACCAGACAAgtaagtaaacttgcatgaaatttctgtagccaactatgaaccttatcatatattaactttgtccatcaatggtcaatcaagcacttgaactttgaattga

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA