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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGGACTCTTCTGTGGTTAGAATGGCAGCACCCAAGCCCATTTCTCGTCTTATTTCTCACGTCATTCTTGATTTGGATGGCACCCTCTTAAACACAGgtgacttaaaacttggaaacaactatgattaatggttttttgaggtttagtgtactgaattcacctatctgagctgacttcgattctcttgtcgactctatgtggcag

Basic information

species Zea mays
transcript GRMZM2G027115_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g32730.1 (Oryza sativa), 5'ss of exon 2
GCATTGGACTCTTCTG--TGGTTAGAATGGCAGCACCCAAGCCCATTTCTCGTCTTATTTCTCACGTCATTCTTGATTTGGATGGCACCCTCTTAAACACAGgtgacttaaaacttggaaacaactatgattaatggttttttgaggtttagtgtactgaattcacctatct-gagctgac-ttcgattctcttgtcgactctatgtggcag
  | |   ||||||    |  | | ||||||||| |||||||||||| |||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||| | |||  ||| |||    | || ||     | |  | |   ||    | ||   ||||  |||||  |  | |  ||   || ||||||     | || ||||||
--ACTAAGCTCTTCCAATTTTTAAAAATGGCAGCTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATGGTACCCTCTTAAACACAGgtgattaaaatgttgtaaa----tttgcttgcatttgtcattaacctt----tgcttggttcagttatctcaaattcatattttcttatcttgttttaaccatttggcag

upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g32730.2 (Oryza sativa), 5'ss of exon 2
GCATTGGACTCTTCTGTGGTTAGAATGGCAGCACCCAAGCCCATTTCTCGTCTTATTTCTCACGTCATTCTTGATTTGGATGGCACCCTCTTAAACACAGgtgacttaaaacttggaaacaactatgattaatggttttttgaggtttagtgtactgaattcacctatct-gagctgac-ttcgattctcttgtcgactctatgtggcag
                               | |||||||||||| |||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||| | |||  ||| |||    | || ||     | |  | |   ||    | ||   ||||  |||||  |  | |  ||   || ||||||     | || ||||||
-------------------------------CTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATGGTACCCTCTTAAACACAGgtgattaaaatgttgtaaa----tttgcttgcatttgtcattaacctt----tgcttggttcagttatctcaaattcatattttcttatcttgttttaaccatttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71761908|gb|DR959845.1|DR959845
EST:     TCTTATTTCTCACGTCATTCTTGATTTGGATGGCACCCTCTTAAACACAG                         ATTCTGTTGTAAGTAAGGTAGTAAAACCATTTATTCTAAAGAATGGAAAAA
genomic: TCTTATTTCTCACGTCATTCTTGATTTGGATGGCACCCTCTTAAACACAGgtgacttaaa ... tatgtggcagATTCTGTTGTAAGTAAGGTAGTAAAACCATTTATTCTAAAGAATGGAAAAA
EST: gi|76018984|gb|DT946154.1|DT946154
EST:     TCTTATTTCTCACGTCATTCTTGATTTGGATGGCACCCTCTTAAACACAG                         ATTCTGTTGTAAGTAAGGTAGTAAAACCATTTATTCTAAAGAATGGAAAAA
genomic: TCTTATTTCTCACGTCATTCTTGATTTGGATGGCACCCTCTTAAACACAGgtgacttaaa ... tatgtggcagATTCTGTTGTAAGTAAGGTAGTAAAACCATTTATTCTAAAGAATGGAAAAA