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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggcaacctgtcaccttgtttgaatatagggtactacaagttgtgcataaagcctgattaatgcgttggccattgggttgatgaccatgcaaca...

Basic information

species Zea mays
transcript GRMZM2G026767_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 3
GAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggcaacctgtcacct-tgtttgaatatagggtactacaagttgtgcataaagc--ctgattaatgcgt--tggccattgggttgatgaccatgcaaca
 |||||||||||| ||||| |  ||||||||||||| ||||| |   |||   ||||||||||||| ||||||||||||||||| || ||||||||||||||||  |  ||||||||||  |  |||| |||||   | ||   || |||| ||| | ||   |||||| ||  |  || | | ||   |  ||   | |     
CAGAGTTGCATACAACATTGCTGAAGCATTGGAATATTGTAGCAATGAGGAAAGGCCTTTATATCACGACCTAAATGCATACAGAGTACTCTTTGATGAGgtaagcgatcaacctgtcaagtacgtttcaatatgtagcacctgaaattgtacatcaggcaagtgattattgtctcttgccaactgccattttgttgacg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937605|gb|DV175198.1|DV175198
EST:     GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAG                         AATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
genomic: GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggc ... ctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
EST: gi|76937335|gb|DV175108.1|DV175108
EST:     GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAG                         AATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
genomic: GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggc ... ctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
EST: gi|149098700|gb|EE184712.2|EE184712
EST:     GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAG                         AATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
genomic: GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggc ... ctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT