Sequence
atgc intronic sequence ATGC exonic sequenceTCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGCCTCGACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgtaagcggacggacggaatcaccgtctcgtcgtcgacagaccgtatttttttcttctctttcccccccgccccgatttcagttccaggttcctgacacgcggtgattccacttgccaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G026643_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g45250.1 (Oryza sativa), 5'ss of exon 3
TCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGCCTCGACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgtaagcggacggacggaatcaccgtctcgtcgtcgacagaccgtatttttttcttctctttcccccccgccccgatttcagt--tccaggttcctgacacg---cggtgattccacttgccaag----------------------
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CCATCCGGACGAGAAGCAGCGCGCCGAGCTCAGCAGGAGGCTCTCCCTCGATGCGCGGCAGGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGATGAAGgtaaatcatccg-cgagaacatcgcatcgt-------gtgccttagtcttcttctctcgtcggcgttcgagccggttcgtttcgtgcaatttcctgacacggtttcatgatccccccgcgcgcgccgcgatcttcgttttaccaag
upper sequence: GRMZM2G026643_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ34024 (Selaginella moellendorffii), 5'ss of exon 2
TCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGCCTCGACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgtaagcggacgga--cggaatcaccgtctcgtcgtcgacagaccgtatttttttcttctctttcccccccgccccgatttcagttccaggttcctgacacgcggtgattccacttgccaag
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TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgatgtaaagatcttccttgtctgtccag------------------------------------------------------
upper sequence: GRMZM2G026643_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
TCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGCCTCGACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgtaagcggacgga--cggaatcaccgtctcgtcgtcgacagaccgtatttttttcttctctttcccccccgccccgatttcagttccaggttcctgacacgcggtgattccacttgccaag
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TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148952398|gb|EC898218.2|EC898218EST: ACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG ACGCAACTGGAGCGGCACGAGAACGCGCTTCTCAAGCAAGAGAACGACAAG
genomic: ACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgtaagcggac ... acttgccaagACGCAACTGGAGCGGCACGAGAACGCGCTTCTCAAGCAAGAGAACGACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGCCTCGACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgtaagcggacggacggaatcaccgtctcgtcgtcgacagaccgtatttttttcttctctttcccccccgccccgatttcagttccaggttcctgacacgcggtgattccacttgccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG