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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCTCGTCTTCTACAAGGGGAGGGCCCCCAACGGCCACAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAATGCGCCGCCGCAGgcaagctccatctccttcacagtgatctaccttaaattacccatattcattgtatcagatgcaccactaagcatatatactcttctgtttaattctattc...

Basic information

species Zea mays
transcript GRMZM2G025642_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025642_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g03540.1 (Oryza sativa), 5'ss of exon 2
GACGCTCGTCTTCTACAAGGGGAGGGCCCCCAACGGCCACAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAATGCGCCGCCGCAGgcaagctc-catctccttcacagtgatctaccttaaattacccatattcattgtatcagatgcaccactaagcatatatactcttctgtttaattctattc-
||| ||||||||||| ||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |    |  ||  |  |  || |     |  ||   ||    || |||  || ||   |   | | |||   | |    |      |||  || ||     
GACACTCGTCTTCTATAAGGGCAGGGCGCCTAATGGCCAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAACGCGCCGCCACAGgtatatacatataccgatttcactagctaa--ttggtttcttaattttctctgcatgctagctagctctacataaactagcaaactggttccatgcttgata

upper sequence: GRMZM2G025642_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT2G18060.1 (Arabidopsis thaliana), 5'ss of exon 2
GACGCTCGTCTTCTACAAGGGGAGGGCCCCCAACGGCCACAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAATGCGCCGCCGCAGgcaagc-tccatctcctt---------cacagtgatctaccttaaattacccatattcattgtatcagatgcaccactaagcatatatactcttctgtttaattctattc
 || || || |||||||| ||  | || || || ||| | ||  |||| ||||||||||| |||||||| |||||| | || |||||||| ||||| |||| |    |   ||| |||         || |    | |   || |||||    |  |  |    |  | |    |   | ||| ||     ||| |   |          
AACACTTGTGTTCTACAAAGGACGTGCACCTAATGGCAAGAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCACCGCCCCAGgtacttgtgtttctactttggtggggacaaaacatttttgttttaattagggcttcttgtctcttgggctctttcgtgaggcacatgctaacttttaggt----------

upper sequence: GRMZM2G025642_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
GACGCTCGTCTTCTACAAGGGGAGGGCCCCCAACGGCCACAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAATGCGCCGCCGCAGg--caagctccatctcc--ttcacagtg--atctaccttaaattacccatattcattgtatcagatgcaccactaagcatatatactcttctgtt-taattctattc
       || |||||||||||  |||| ||  | ||||| ||||||||||||||||||||||||| ||| || ||   || | |  | ||    |||| |   | |  | | || ||  | |||| |   | |  ||| | | |   | | | | ||        ||   || ||     |      | || |   |  | | |   
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATT-CCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat

upper sequence: GRMZM2G025642_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ22020 (Selaginella moellendorffii), 5'ss of exon 2
GACGCTCGTCTTCTACAAGGGGAGGGCCCCCAACGGCCACAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAATGCGCCGCCGCAGgcaagctccatctccttcacagtgatctaccttaaattacccatattcattgtatcagatgcaccactaagcatatatactcttctgtttaattctattc
          |||||||  ||||| || || ||||| || ||||||||||||||||||||||||||| | ||||||   |||   |    || |  |||| |||   | || |          ||||  |    | ||  |    ||  |  | |   ||   || || |   | |    | |     | || |  |   
---------TTTCTACAGAGGGAGAGCTCCAAACGGGCAGAAGACCGACTGGATCATGCACGAGTACAGGCTCGAGGAGGACATCAGCA-GCAGTGGCAG-CAACAACAATgt--------aagatcctctcgtacttggcagcttttttcttct---ataaccctcttatttttttggttttggctctgaaatgcag--