1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTTCCTCGTCGCCGTCATCCTTGGCTCCGCTGTCCATTCCTCCAATGCAGCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttctgatcattcatttcaacctcctgatctgagtagtttgccatttacatctttaatctttttatttatagactgctctgactgtcgttactgcag
species | Zea mays |
transcript | GRMZM2G025528_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|148994757|gb|EE034229.2|EE034229
genomic: GCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|148957676|gb|EC903790.2|EC903790
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|149086713|gb|EE176255.2|EE176255
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|148953239|gb|EE152723.2|EE152723
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|71330461|gb|DR801989.1|DR801989
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|148995735|gb|EE034963.2|EE034963
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGATGCTCCEST: gi|148982279|gb|EE028228.2|EE028228
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGATGCTCC
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|71446963|gb|DR828013.1|DR828013
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGEST: gi|32923995|gb|CF028807.1|CF028807
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
EST: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGG GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
genomic: GCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttct ... gttactgcagGACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCCTCGTCGCCGTCATCCTTGGCTCCGCTGTCCATTCCTCCAATGCAGCTGACAATGAGCAGAAACTCGGTGCCTCCACGAATGCCTACAAACTCGGgtatctttctgatcattcatttcaacctcctgatctgagtagtttgccatttacatctttaatctttttatttatagactgctctgactgtcgttactgcag
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