1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTACGGCCACATGAGCTACGGCCGTGGAGGTGACCCTAATGGCGCGCCACAAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttactgccgaatccaagtatcactattcgcttgccacctccgtttgtgggatattggtgtgccaatggctcaattgcttgtttctggtctgatcgcag
species | Zea mays |
transcript | GRMZM2G025231_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATG GTGGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGTEST: gi|211344804|gb|FL219954.1|FL219954
genomic: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttac ... ctgatcgcagGTGGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGT
EST: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCAC-AACGGGCAGATG GTGGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGTEST: gi|211344807|gb|FL219957.1|FL219957
genomic: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttac ... ctgatcgcagGTGGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGT
EST: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATG GTGGATGACATCTCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGTEST: gi|211344805|gb|FL219955.1|FL219955
genomic: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttac ... ctgatcgcagGTGGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGT
EST: AAGCTTTTCAGCTCAACCCCAATGTTCCACTTCTCACCAACGGGCAGATG GTGGATGANCATCCCAC-GGAGCAGCACGCGCTGGTGCCTTCTT-CATGGEST: gi|211489169|gb|FL444477.1|FL444477
genomic: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttac ... ctgatcgcagGTGGATGA-CATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGG
EST: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATG GTTGATGACATCCCACCGGAGCAGCATGCGCTGGTGCCTTCTTTCATGGGC
genomic: AAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttac ... ctgatcgcagGTGGATGACATCCCACCGGAGCAGCACGCGCTGGTGCCTTCTTTCATGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACGGCCACATGAGCTACGGCCGTGGAGGTGACCCTAATGGCGCGCCACAAGCTTTCCAGCTCAACCCCAATGTTCCACTCCTCACCAACGGGCAGATGgtactgttactgccgaatccaagtatcactattcgcttgccacctccgtttgtgggatattggtgtgccaatggctcaattgcttgtttctggtctgatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG