1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcagaatccattgggtaaacaaaacctgtccaatggccaccatatcctagaattgtttaatctgagacgcatgttaagtctatttgttctgttagctgtgtaatcttcacacttcttttcctctttgtttgcccag
species | Zea mays |
transcript | GRMZM2G024690_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAG TTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGGEST: gi|148938797|gb|EC883136.2|EC883136
genomic: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcag ... gtttgcccagTTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGG
EST: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAG TTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGGEST: gi|148967404|gb|EE018630.2|EE018630
genomic: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcag ... gtttgcccagTTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGG
EST: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAG TTAGAAATCATCCATCTGTTGATCTGAGGATTGTGTTCCTTCCCCTGTTGGEST: gi|211453584|gb|FL021068.1|FL021068
genomic: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcag ... gtttgcccagTTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGG
EST: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAG TTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGGEST: gi|211374151|gb|FL287201.1|FL287201
genomic: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcag ... gtttgcccagTTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGG
EST: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAG TTAGAAATCATCCATCTGTTGATCTGAAGAT-GTGTTCCTTCCCCTGTTGGEST: gi|211374152|gb|FL287202.1|FL287202
genomic: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcag ... gtttgcccagTTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGG
EST: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAG TTAGAAATCATCCATCTG
genomic: ACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcag ... gtttgcccagTTAGAAATCATCCATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAGCTGCTTCTTTGTATATATCTTGAAAGCATAAGAGgtagggtcagaatccattgggtaaacaaaacctgtccaatggccaccatatcctagaattgtttaatctgagacgcatgttaagtctatttgttctgttagctgtgtaatcttcacacttcttttcctctttgtttgcccag
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT