1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCAAACAAGGAGAAGGAGGAGGACTTCATGGCGATGAAGGGCTCCAAGCTGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcccttccactaattcattttataagttttcacttcattgctatgatcgtactcattcatttgaacatgtcttctgttacattttttggacaactgtag
species | Zea mays |
transcript | GRMZM2G024395_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAAEST: gi|78106870|gb|DV525288.1|DV525288
genomic: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcc ... acaactgtagATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAAEST: gi|76286625|gb|DV026193.1|DV026193
genomic: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcc ... acaactgtagATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAAEST: gi|93284387|gb|EB676651.1|EB676651
genomic: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcc ... acaactgtagATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATCEST: gi|76914671|gb|DV165630.1|DV165630
genomic: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcc ... acaactgtagATGGTGAGCCCAGGAGCTTGGTTATCAGATC
EST: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAAEST: gi|71775433|gb|DR973311.1|DR973311
genomic: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcc ... acaactgtagATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAAEST: gi|101386838|gb|EB815436.1|EB815436
genomic: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcc ... acaactgtagATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCTCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATAT
genomic: TGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcc ... acaactgtagATGGTGAGCCCAGGAGCTTGGTTATCAGATCTATCTCATGAGAGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAACAAGGAGAAGGAGGAGGACTTCATGGCGATGAAGGGCTCCAAGCTGCCACAGAGGCCAAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcccttccactaattcattttataagttttcacttcattgctatgatcgtactcattcatttgaacatgtcttctgttacattttttggacaactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT