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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAGgtagagcagctttgttgaattacggcatatgtttctgtgcttttcttgcttgttacgctcatgcccattgatttaatacag

Basic information

species Zea mays
transcript GRMZM2G024303_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024303_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g01760.1 (Oryza sativa), 5'ss of exon 3
GTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAGgtag---------agcagc-tttgttgaattacggcatatgtttctg--------------------------tgcttttcttgcttg-ttacgctcatgcccattgatttaatacag
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GTTCCCAGTTGGCAGTCATGTTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAGgtaagtaaataataatagtaccttctccttcatgccattctttccaagagaaaaaaaaaagaagaagagaggttgctttgctttcttgattgcacacatgtacatcaacttgatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021295|gb|AW066223.1|AW066223
EST:     TCGTCGGCGCCTTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAG                         GGCCAAGAAGATCTGTGTGAGTCTTTCTTCGCGTATAATCGTGCCAAGGGG
genomic: TCGTCGGCGCCTTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAGgtagagcagc ... tttaatacagGGCCAAGAAGATCTGTGTGAGTCTTTCTTCGCGTATAATCGTGCCAAGGGG
EST: gi|6020969|gb|AW065897.1|AW065897
EST:     TCGTCGGCGCCTTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAG                         GGCCAAGAAGATCTGTGTGAGTCTTTCTTCGCGTATAATCGTGCCAAGGGG
genomic: TCGTCGGCGCCTTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAGgtagagcagc ... tttaatacagGGCCAAGAAGATCTGTGTGAGTCTTTCTTCGCGTATAATCGTGCCAAGGGG
EST: gi|20301156|gb|BQ164099.1|BQ164099
EST:     TCGTCGGCGCATTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAG                         GGCCAAGAAGATCTGTGCGAGTCTTTCTTCGCGTATAATCGTGCCAAGGGG
genomic: TCGTCGGCGCCTTCATAATGCCATGTGGGAACTGCTTCTACTGCGTTAAGgtagagcagc ... tttaatacagGGCCAAGAAGATCTGTGTGAGTCTTTCTTCGCGTATAATCGTGCCAAGGGG