1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AAAACTTTCCACCATGGGCATCCAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCATgtatgtggaatcactcacccagctaataattactgctcttgcagtttgccacggtgaagtgtgaaccattggcttggctaatcgtgcgtgtgcag
species | Zea mays |
transcript | GRMZM2G023715_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCAT GGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCACTCCGACCATCGGEST: gi|76291831|gb|DV031399.1|DV031399
genomic: CAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCATgtatgtggaa ... gcgtgtgcagGGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCACTCCGACCATCGG
EST: CAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCAT GGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCACTCCGACCATCGGEST: gi|71768121|gb|DR966058.1|DR966058
genomic: CAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCATgtatgtggaa ... gcgtgtgcagGGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCACTCCGACCATCGG
EST: CAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCAT GGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCACTCCGACCATCGGEST: gi|149076349|gb|EE164965.2|EE164965
genomic: CAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCATgtatgtggaa ... gcgtgtgcagGGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCACTCCGACCATCGG
EST: CAAAGAAGTCTAGCTGCTGACATAGGACAGCTCAGTGACCTGCAATCCAT GGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCCCTCGGACCATCGG
genomic: CAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCATgtatgtggaa ... gcgtgtgcagGGACCTGTCATTCAACAACGAACTCGGCGGCGTGCTCACTCCGACCATCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACTTTCCACCATGGGCATCCAAGGAAGTCTAGCTGCTGACATAGGCCAGCTCAGTGACCTGCAATCCATgtatgtggaatcactcacccagctaataattactgctcttgcagtttgccacggtgaagtgtgaaccattggcttggctaatcgtgcgtgtgcag
- - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA