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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCTGCACTTCGAGAGTTCGTCGGAGGTGGAAAGCCTGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggtcacaaatttatacttgccatgttcttttttggaaaccagttaatagaatgtcacgatagttgaatagtgttgctttcag

Basic information

species Zea mays
transcript GRMZM2G023528_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023528_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g03740.1 (Oryza sativa), 5'ss of exon 3
TTCCCTGCACTTCGAGAGTTCGTCGGAGGTGGAAAGCCTGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggtcacaaatttatacttgccatgttcttttttggaaaccagttaatagaatgtcacgatagttgaatagtgttgctttcag
|| |||||||||||||| || || ||    |||| ||||||||||||||| |||||||| |||||||| || || ||||| |||||||||  ||| | ||||    |    ||    | |||||| || | || || || ||  ||  |      ||                    
TTTCCTGCACTTCGAGAATTTGTTGGTACAGGAAGGCCTGTCTGGGGAACTTGTGCTGGACTCATCTTCCTAGCTAACAAGGCAGTAGgtatgtgagccacagcaattggtttaatct-ttctttctttggaatcaattgatgaaagttatttgcag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020368|gb|AW065296.1|AW065296
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|71318383|gb|DR795955.1|DR795955
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|91055149|gb|EB165567.1|EB165567
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAGACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|5895630|gb|AW036876.1|AW036876
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|78120474|gb|DV538858.1|DV538858
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|33467208|gb|CF244257.1|CF244257
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|74233030|gb|DT640944.1|DT640944
EST:     GGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: GGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|71437533|gb|DR818583.1|DR818583
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|149073844|gb|EE162166.2|EE162166
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|74233031|gb|DT640945.1|DT640945
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|148986692|gb|EE030480.2|EE030480
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|40303169|gb|CK347556.1|CK347556
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCC
EST: gi|15100467|gb|BI396258.1|BI396258
EST:     TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAG                         GGCAAAAAACAGGGGGGCAGGAACTT
genomic: TGTCTGGGGAACCTGTGCTGGGCTCATCTTTCTTGCAAACAAAGCAGTAGgtgagtgggt ... ttgctttcagGGCAAAAAACAGGGGGGCAGGAACTT