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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGCCTTGTCTGCCAGAGTGCTTTGGACCGTCTACATAGAACTAGGGAGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAGgtatggatcttttcatcatctttgtctggtctctgaacagataattcacctttctggtatagtggtcgtatatatatatttccatctcgtgcggtacaag...

Basic information

species Zea mays
transcript GRMZM2G022997_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022997_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g48300.1 (Oryza sativa), 5'ss of exon 28
GGAAAGCCTTGTCTGCCAGAGTGCTTTGGACCGTCTACATAGAACTAGGGAGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAGgtatggatctttt-catcatctttgtctggtctctgaacagataattcacctttctggtatagtgg-tcgtatatatatatttc-catctcgtgcggtacaag
||| |||||||||||||| || ||||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||     |     |    ||   |   | |   |   |  |  |||  ||| |   || | | | |||| ||        |  ||   
GGATAGCCTTGTCTGCCAAAGCGCTTTAGACCGACTGCATAGAACCAGGGAGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatctttttcatatggctcacaagaaaacttgccttgttacaaatgctatttttattctgggtaagatttctgtttttcacaaaatacatgagac---

upper sequence: GRMZM2G022997_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G49000.1 (Glycine max), 5'ss of exon 28
GGAAAGCCTTGTCTGCCAGAGTGCTTTGGACCGTCTACATAGAACTAGGGAGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAGgtatggatcttttcatcatcttt---gtctggtctctgaacagataattcacctttctggtatagtggtcgtatatatatatttccatctc--gtgcggtacaag
 || ||||| || ||| | | |||| | || || ||  ||| ||| | |||||||||||| |||||  | |||||||| || ||||||||||||| ||||||| |    ||||   | | |     |  | || | |||   | || | ||  |||     |   | ||| |    |    ||| ||| |    || |||     
AGAGAGCCTCGTTTGCTATAATGCTCTAGAGCGCCTCTATAAAACAAAGGAGCTTGATTATATGAGCTACATTGTGCTGAGGATGTTTGAAAACACAGAGgtaggttatttttggccctttcccaagcattgtttatgatttgttactgcatgtttgcaacaacctagtctttaccaccagtttacattttcaatgtggt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211369658|gb|FL316930.1|FL316930
EST:     AGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAG                         GTTCCTTTGGAAGATGAGAAGAGGTTCAGGATTGAAATGACGTTCAGTCGT
genomic: AGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAGgtatggatct ... atgtttgcagGTTCCTTTGGAAGATGAGAAGAGGTTCAGGATTGAAATGACGTTCAGTCGT
EST: gi|40286921|gb|CK327313.1|CK327313
EST:     AGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAG                         GTTCCTTTGGAAGATGAGAAGAGGTTCAGGATTGAAATGACGTTCAGTCGT
genomic: AGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAGgtatggatct ... atgtttgcagGTTCCTTTGGAAGATGAGAAGAGGTTCAGGATTGAAATGACGTTCAGTCGT
EST: gi|211101728|gb|FL471161.1|FL471161
EST:     AGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAG                         GTTCCTTTGGAAGATGAGAAGAGATTCAGGATTGAAATGACGTTCAGTCGT
genomic: AGCTTGATTACATGAGTAATATTGTGCTTAGAATGTTTGAAAACATAGAGgtatggatct ... atgtttgcagGTTCCTTTGGAAGATGAGAAGAGGTTCAGGATTGAAATGACGTTCAGTCGT