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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGGAGAGCAGCGATGACTTGGCTAACCCACCGAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcatagccttctgccaatcagtgctggttgttactgtcttgtcatattatcgatacttttatgaacaatatgattttgttgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G022909_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452300_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 2
-CCGAGGAGAGCAGCGATGACTTGGCTAACCCACCGAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcatagccttctgccaatcagtgctggttgttactgtcttgtcatattatcgatacttttatgaacaatatgattttgttgcgtgcag
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GCCGAGGGAGATTCCGACGAGCTTGTAGATCCTCCGAAGGTGGAGGACAAGATCGGTGCTGTGCCTCATGGCCTTTCCACCGATTCAGATGTCGTCAAGAggtgtgcgttgtttgatttct-------cttttttctattgttct--cttgtttctggtgtctaaacgcacg-cgtgttgttgtgat-tgcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10697593|gb|BE997317.1|BE997317
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCCGAGTCTATCTCTAGGAAGACTCTCAGGAGCTCAGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcatag ... ttgcgtgcagGGAAGCCGAGTCTATCTCTAGGAAGACTCTCAGGAGCTCAGCCGAGAAGTT