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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACCGTTTGCGCCAAGAGATAGAAGACCTGGAGAAAGATACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttttttactctatatatggtatgcccttggcttgctttccattgtttcatcactattttcattaaaagctacttaaaatcttggtatgcttgg...

Basic information

species Zea mays
transcript GRMZM2G022876_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022876_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g34950.2 (Oryza sativa), 5'ss of exon 3
GAAAACCGTTTGCGCCAAGAGATAGAAGACCTGGAGAAAGATACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttttttactctatatatggtatgcccttggcttgctttccattgtttcatcactattttcattaaaagctacttaaaatcttggtatgcttgg-
||||||||| |||| ||||| |||||||| || |||||||||||||| |||||  || ||||||||||||||||||||||||||||||| ||||  ||||  ||    | |||    |||     |   ||| |||   || | | || |     |  ||| | || ||| |   | | | || ||      
GAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGgtgctttttgcttctgttttattacatatagttatcctttg-tttgtgttatctaattatacaatatatttatagatacatggtaacattgtgtggcaaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16377665|gb|BI992046.1|BI992046
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
EST: gi|22819283|gb|BU499373.1|BU499373
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
EST: gi|149071910|gb|EE160296.2|EE160296
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
EST: gi|211533931|gb|FL079629.1|FL079629
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
EST: gi|21809641|gb|BQ667959.1|BQ667959
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
EST: gi|6342689|gb|AW165513.1|AW165513
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
EST: gi|211533928|gb|FL079626.1|FL079626
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
EST: gi|14243662|gb|BG841333.2|BG841333
EST:     TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG                         GATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG
genomic: TACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttt ... attgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTG