1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGTGGCTGTCAGTGCATGCTCACACGTGGGAGGTCATAAGTATGCAGGAAACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactgttattaaattaacattaaacgttcactttgtcttgtgcaactatttttttacttttgcatatacacattcttgccttttataatctaattagtactcaatacaattgcaattatag
species | Zea mays |
transcript | GRMZM2G020775_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGTCATCATTTTCAGTTCTGATGCCAAGGGGAGAAGTGACTGGTCATTG GTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATATEST: gi|74232969|gb|DT640883.1|DT640883
genomic: ACGTCATCATTTTCAGTTCTGATGCCAA-GGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
EST: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTG GTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATATEST: gi|19057851|gb|BM736518.1|BM736518
genomic: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
EST: AACGTCATCATTTTCAGCTCTGATGCCAAGGGAGAAGTGACTGGTCATTG GTATGGCTATGTTGCTCCTGATGATGTGCCTGTTTTGCTGCATAAACATATEST: gi|211389154|gb|FL356157.1|FL356157
genomic: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
EST: AATGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTG GTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATATEST: gi|211066679|gb|FL084209.1|FL084209
genomic: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
EST: AATGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTG GTATGGTTATGTTEST: gi|22490761|gb|BU050684.1|BU050684
genomic: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTT
EST: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTG GTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATATEST: gi|211059299|gb|FL363871.1|FL363871
genomic: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
EST: AATGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTG GTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTTCTGCATAAACATATEST: gi|19058328|gb|BM736995.1|BM736995
genomic: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
EST: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTG GTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
genomic: AACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactg ... gcaattatagGTATGGTTATGTTGTTCCTGATGATGTGCCTGTTTTGCTGCATAAACATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGGCTGTCAGTGCATGCTCACACGTGGGAGGTCATAAGTATGCAGGAAACGTCATCATTTTCAGTTCTGATGCCAAGGGAGAAGTGACTGGTCATTGgtaagtactgttattaaattaacattaaacgttcactttgtcttgtgcaactatttttttacttttgcatatacacattcttgccttttataatctaattagtactcaatacaattgcaattatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT