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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGACGTGCTACATCACGCCGCTCATCGGCGCCTTCTTCGCCGACGCGTACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgtcgctcgaatcccatcccattgccatccgacgaggagaagacaccacctgtgactgacggatcgactcaactgaactgaacag

Basic information

species Zea mays
transcript GRMZM2G020484_T08
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020484_T08 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g04950.1 (Oryza sativa), 5'ss of exon 3
AGGGACGTGCTACATCACGCCGCTCATCGGCGCCTTCTTCGCCGACGCGTACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaa--gatcgtcgctcgaatccca---tcccattgccatccgacgaggagaagacaccacctgtgactgacggatcgactcaactgaactgaacag
 ||||| ||||||||||| || ||  |||| |||||||| || || || |||||||| |||||||||||||| |||| ||||||||||||||||||  | ||||   ||||||  | | ||  ||   ||  ||||| ||       || |    |       | ||      ||| |   ||              
GGGGACTTGCTACATCACCCCCCTTCTCGGTGCCTTCTTGGCTGATGCCTACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatcgtc--ttggatttcagtttctgattgctatgatcgatggtgtgatcgaagagagagatgttttgatggttgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211365735|gb|FL263996.1|FL263996
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|148974530|gb|EE025317.2|EE025317
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|149099731|gb|EE185781.2|EE185781
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|89760037|gb|DY688639.1|DY688639
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|148972810|gb|EE023795.2|EE023795
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCCTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|78112564|gb|DV530958.1|DV530958
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGCCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|74234545|gb|DT642459.1|DT642459
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|76936415|gb|DV174717.1|DV174717
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|149101742|gb|EE287361.2|EE287361
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|101394497|gb|EB819183.1|EB819183
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|149074406|gb|EE162795.2|EE162795
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|211049421|gb|FL097868.1|FL097868
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|50323834|gb|CO518960.1|CO518960
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCCTCGGTGAAGGG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGG
EST: gi|71439086|gb|DR820136.1|DR820136
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|76925417|gb|DV170443.1|DV170443
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
EST: gi|148949850|gb|EC895341.2|EC895341
EST:     ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTC                         GGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG
genomic: ACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaagatcgt ... aactgaacagGGCCTGGCGCTGCTGACGATGGCTTCGTCGGTGAAGGGGCTGGTGCCTACG