1 5' 3' | 2 5' 3' | 3 5' 3' |
ATACAAGGAGGATGTGCTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttgtgtttgcgctcggaatggtttcctgtgcttgtttggattgttgatgttgttttcttctgtgatttacag
species | Zea mays |
transcript | GRMZM2G020418_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCEST: gi|76018426|gb|DT945596.1|DT945596
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCEST: gi|50332975|gb|CO528101.1|CO528101
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCEST: gi|76021688|gb|DT948858.1|DT948858
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCEST: gi|74245267|gb|DT653181.1|DT653181
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCEST: gi|50330327|gb|CO525453.1|CO525453
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGNGGCCEST: gi|78087731|gb|DV516124.1|DV516124
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCEST: gi|93013576|gb|EB639096.1|EB639096
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCEST: gi|148956652|gb|EC902508.2|EC902508
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
EST: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGT GCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
genomic: CTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttg ... tgatttacagGCCGCAGGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACAAGGAGGATGTGCTGAACCACAAGAAGAAGGACGTGGACAAGGAGAAACTCGGCCGGAATGTgtgagtgttgtgtttgcgctcggaatggtttcctgtgcttgtttggattgttgatgttgttttcttctgtgatttacag
- - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA