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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAGgtgaattcttactatcccccttgtggtgaatagttgaacaatctgctaagagcattacttgttgcacagtttataagccttccggtgaatgttgcag

Basic information

species Zea mays
transcript GRMZM2G020002_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g59340.3 (Oryza sativa), 5'ss of exon 6
GTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAGgtgaattcttactatcccccttgtggtgaatagttgaacaatctgctaagagcattacttgttgcacag-tttataagccttccggtgaatgttgcag--
|||| || |||| |||| |  || || || ||||| ||||||||||||||||||||| |||||||||  |        || | || | ||    |||  | ||      ||||||| |   | | ||||| |  |||| ||  |||||  ||   
GTTGGTGATGATCATGTAAAAGTGATTGATGCAACTGGAAAATATGTCATGCCAGgtaaattcttacggttt------tgataaacattttgg-aattagtta------ttacttgctcttcgggtttatcattcttctggcaaatgtcacacag

upper sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g59340.2 (Oryza sativa), 5'ss of exon 6
GTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAGgtgaattcttactatcccccttgtggtgaatagttgaacaatctgctaagagcattacttgttgcacag-tttataagccttccggtgaatgttgcag--------------------------------------------------------------------------------------
|||| || |||| |||| |  || || || ||||| ||||||||||||||||||||| |||||||||  |        || | || | ||    |||  | ||      ||||||| |   | | ||||| |  |||| ||  |||||  ||                                                                                       
GTTGGTGATGATCATGTAAAAGTGATTGATGCAACTGGAAAATATGTCATGCCAGgtaaattcttacggttt------tgataaacattttgg-aattagtta------ttacttgctcttcgggtttatcattcttctggcaaatgtcacacaggtggaattgaccctcacactcacctggagatggaattcatgggaactgtaaccattgatgatttctttagtggtcatgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082368|gb|EE171552.2|EE171552
EST:     TGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAG                         GTGGAATTGACCCTCACACGCACCTGGAGATGGAGTTCATGGGCACCGTGA
genomic: TGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAGgtgaattctt ... aatgttgcagGTGGAATTGACCCTCACACGCACCTGGAGATGGAGTTCATGGGCACCGTGA
EST: gi|87152398|gb|DY397187.1|DY397187
EST:     TGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAG                         GTGGAATTGAC
genomic: TGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATGCCAGgtgaattctt ... aatgttgcagGTGGAATTGAC