1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTACCATGGGGCTGACCAGGACGTTGAGCTGTTGAAACTCGAAGCGGATAAAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAGgtgtgctaaactgtttctcagattgtctcatgcatggagaagttcttattatgatttgctaggcatatagctttcaagtgttccagagaagcctgctctgtagctgcatgacctatcttatgtgtgtcttgtgtgtgtgtgtaaccttttcatcctatatcctttcttaag
species | Zea mays |
transcript | GRMZM2G019926_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAG GGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGCEST: gi|148930589|gb|EE285251.2|EE285251
genomic: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAGgtgtgctaaa ... ctttcttaagGGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGC
EST: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAG GGGATGAGAATAGTCGAAAAGGC-TGATGAATTTGTGGATTCTGTACTGAGEST: gi|149083583|gb|EE172920.2|EE172920
genomic: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAGgtgtgctaaa ... ctttcttaagGGGATGAGAATAGTCGAAA-GGCCTGATGAATTTGTGGATTCTGTACTGAG
EST: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAG GGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGCEST: gi|148963106|gb|EE014066.2|EE014066
genomic: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAGgtgtgctaaa ... ctttcttaagGGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGC
EST: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAG GGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGCEST: gi|71432972|gb|DR814022.1|DR814022
genomic: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAGgtgtgctaaa ... ctttcttaagGGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGC
EST: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAG GGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGC
genomic: AAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAGgtgtgctaaa ... ctttcttaagGGGATGAGAATAGTCGAAAGGCCTGATGAATTTGTGGATTCTGTACTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCATGGGGCTGACCAGGACGTTGAGCTGTTGAAACTCGAAGCGGATAAAATCGGTTATCCTGTTTTAATCAAACCCACCCATGGTGGAGGGGGCAAGgtgtgctaaactgtttctcagattgtctcatgcatggagaagttcttattatgatttgctaggcatatagctttcaagtgttccagagaagcctgctctgtagctgcatgacctatcttatgtgtgtcttgtgtgtgtgtgtaaccttttcatcctatatcctttcttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG