Sequence
atgc intronic sequence ATGC exonic sequenceGTCATTGGTCCATATCGATCTGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtaattagatgttgtttctgatattataaaaaaaaggatttgctagtttgcatactagatctatttgagaatgttggcaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 3
GTCATTGGTCCATATCGATCTGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtaattagatgttgtttctgatattataaaaaaaaggatttgctagtttgcatactagatctatttgagaatgttggcaatgcag
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GTCATTGGTCCATATCGATCTGGAAAGTCTTTTCTCCTCAACCAGCTTCTCTCTTTATCATGTGAAAAAGgta----gactctactcctggtgtttgagatgcataataggactaagagacctttagggctaatgaaaacatggcaactatgcag
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 3
GTCATTGGTCCATATCGATCTGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtaattagatgttgtttctgatattataaaaaaaagg---atttgctagtttgcatactagatctatttgagaatgttggcaatgcag---
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GTGATTGGCCCATATCGTTCTGGAAAATCATTTCTACTCAATCAGCTTCTTTCTCTTTCTTGTTATGAAGgtgcttc----ttatctcatatactcgggctctgcggtttacttactttttgctactcaacattgacttccaatattttcaaattcatcag
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 3
GTCATTGGTCCATATCGATCTGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgta----attagatgttgtttctgatattataaaaaaaaggatttgctagtt-----tgcatactagatctatttgagaatgttggcaatgcag--------------------------------------------------
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GTAATTGGTCCATACCGCTCTGGAAAATCTTTTTTGCTCAATCAACTTCTCTCCCTTTCTTGTTATGAAGgtgcagcatttactactgtcaagactcttttcccgttcggttttctcttcttcttctttcatggaatgggtgattgtgaatgttt-caacataacttggttggcctcagtgattttctaactgaactttaatattcttttgcag
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S100_89V6.1 (Physcomitrella patens), 5'ss of exon 3
GTCATTGGTCCATATCGATCTGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtaattagatgtt-gtttctgatattataaaaaaaaggatttgctagtttgcatactagatctatttgagaatgttggcaatgcag----------------------------------------------------------------------------------------
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GTCATCGGACCTTATCGTTCTGGAAAATCATTTCTCCTCAATCAGCTTCTGTCACTTTCCTGCAATGAAGgtatttatttatttacttatagtttcatcttcatcagtaactccaagtcagaatgcttaaatgttttcaccttttattggatgtaaacatttagtcctaacttccacaaactacctgttagtcgtagaatcaaggctttgaagcatagtctcatcctcaatcacgtgtatgcag
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ35720 (Selaginella moellendorffii), 5'ss of exon 3
GTCATTGGTCCATATCGATCTGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtaattagatgttgtttctgatattataaaaaaaaggatt--tgctagtttgcatactagatctatttgagaatgttggcaatgcag
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GTCATAGGTCCCTATCGATCGGGAAAATCATTTCTTCTAAACCAGCTTCTATCTCTCACTTGCAATGAAGgtaagct-atgtcacttcgaaggttccttggtgccaaattgttttcattgtgaatacaag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361636|gb|CD445993.1|CD445993EST: TGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAG GTTTTGGAGTTGGTCATATGCGAGATACTAAAACTAAAG
genomic: TGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtaattagat ... ggcaatgcagGTTTTGGAGTTGGTCATATGCGAGATACTAAAACTAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATTGGTCCATATCGATCTGGAAAATCTTTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtaattagatgttgtttctgatattataaaaaaaaggatttgctagtttgcatactagatctatttgagaatgttggcaatgcag
- - - - - - - - - - - - - - - - CTCCTC