1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGAAACGTCGGATGTGGTGCTGGTTACTGGAGCCACCGGTGGTGTTGGGCGACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctactgtcaaccatactcacattggccttgaacatttttccatttttttgtatgaacaattcctacagttcttgtgccatttgttccattttttgagttcag
species | Zea mays |
transcript | GRMZM2G019358_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTEST: gi|211345086|gb|FL234327.1|FL234327
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCT
EST: ACGGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACAGGGCAAG-AGCATGTTGGGGGCGGATGTACCTCTGEST: gi|211349887|gb|FL234353.1|FL234353
genomic: ACGGG-TGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGEST: gi|211345091|gb|FL234332.1|FL234332
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGEST: gi|148936820|gb|EC880961.2|EC880961
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGEST: gi|211345089|gb|FL234330.1|FL234330
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: AACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACA-GGCAAGGAGCATGTTGGGGGCGGATGTACCTCTGEST: gi|71440788|gb|DR821838.1|DR821838
genomic: A-CGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: GACGGGTGGTGGACGTCCTGCAAAAGAAGGAAGTACCTGTTCAAGTATTG GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGEST: gi|211347484|gb|FL234337.1|FL234337
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGEST: gi|91055536|gb|EB165954.1|EB165954
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: GACGGGTGGTGGACGTCCTGCAGAAGA-GGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAAACAAGGCAAGGAGCATGTEST: gi|211345087|gb|FL234328.1|FL234328
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGT
EST: ACGGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACA-GGCAAGGAGCATGTTGGGGGCGGATGTACCTCTGEST: gi|211349886|gb|FL234352.1|FL234352
genomic: ACGGG-TGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... ttgagttcagGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAACGTCGGATGTGGTGCTGGTTACTGGAGCCACCGGTGGTGTTGGGCGACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctactgtcaaccatactcacattggccttgaacatttttccatttttttgtatgaacaattcctacagttcttgtgccatttgttccattttttgagttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG