1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAGgttcttacttatttggggcgttatttctatctgttgtttttcctgtgcagaattttcattaatctttgtttgctgccctttacag
species | Zea mays |
transcript | GRMZM2G018697_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGGACAGAGACATATGGCCCTACTGAGATGATACAG ATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGATGAAGAAAEST: gi|19058258|gb|BM736925.1|BM736925
genomic: TTCGGACAGAGACATATGGCCCTACTGAGATGATACAGgttcttactt ... ccctttacagATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGATGAAGAAA
EST: GGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATCCAG ATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGATTGAAGAAAGEST: gi|166632570|gb|EG258740.1|EG258740
genomic: GGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAGgttcttactt ... ccctttacagATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGAT-GAAGAAAG
EST: ATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAG ATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGAEST: gi|166614176|gb|EG305865.1|EG305865
genomic: ATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAGgttcttactt ... ccctttacagATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGA
EST: TTCGGACAGAGACATATGGCCCTACTGAGATGATACAG ATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGATGAAGAAAGT
genomic: TTCGGACAGAGACATATGGCCCTACTGAGATGATACAGgttcttactt ... ccctttacagATATTGGCTATCCGAGCACAAGTGGAGGAGATTGATATGGATGAAGAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAGgttcttacttatttggggcgttatttctatctgttgtttttcctgtgcagaattttcattaatctttgtttgctgccctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG