Sequence
atgc intronic sequence ATGC exonic sequenceAAGAAGATGGCCGGCCGCGCGGTGCTCCTTGCGGGTCCGCCCGCCACGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgttcggttgctcatttttctcggtcctcacacgaagcagctgttcattcatttggtggtaaagggaggggtttatttctcccccaaggtcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G018697_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g08170.1 (Oryza sativa), 5'ss of exon 2
----AAGAAGATGGCCGGCCGCGCGGTGCTCCTTGCGGGTCCGCCCGCCACGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgttcggttgctcattt-ttctcggtcctcacacgaagcagctgttcattcatttggtggtaaagggaggggtttatttctcccccaaggtcct
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CCAGAAGAAGATGGCCGGGCGCGCGCTGCTTCTCGCCGGCCCGCCCGCCACCGGCAAGACGGCTCTCGCTCTCGGCATCTCCCAGGAGCTCGGTAGTAAGgttggttggtgcctccactccctcattctcctctcgaacaccctttgagcactgctctagatgatt-tgtacactctgctgtaaataaatttggaggttag
upper sequence: GRMZM2G018697_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62040.3 (Oryza sativa), 5'ss of exon 2
----AAGAAGATGGCCGGCCGCGCGGTGCTCCTTGCGGGTCCGCCCGCCACGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgttcggttgctcatttttctcggtcctcacacgaagcagctgttcattcatttgg--tggtaaagggaggggtttatttctcc--cccaaggtcct---
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CCAGAAGAAGATGGCCGGCCGCGCGCTGCTCCTCGCCGGCCCGCCCGCCACCGGCAAGACGGCCCTCGCTCTCGGCATCTCTCAGGAGCTAGGTAGTAAGgttggtgc-ttcaa---cttattctcctcggac---aaactgtattattgttggggtatttggattgatggagataaatgtttgcttctgaaatgcacaatgctacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211207933|gb|FK975839.1|FK975839EST: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAG GTCCCTTTCTGCCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAG
genomic: CGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgt ... tacaatgcagGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAAGATGGCCGGCCGCGCGGTGCTCCTTGCGGGTCCGCCCGCCACGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGgtccgtgcgttcggttgctcatttttctcggtcctcacacgaagcagctgttcattcatttggtggtaaagggaggggtttatttctcccccaaggtcct
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG