1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTACTCCTCGGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAGgtaagcaatggatatatgcccatgtccaagttaaacgaatactaggctataattgcattagtgatttcctttatttatcaatggttttcattatcgctttgatagctgatgttccacttcgtgcttctataataaatttaccattgttagtctataataaatttaccagtgttgctctgttcctag
species | Zea mays |
transcript | GRMZM2G018697_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAG GTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTGGTGGATATGCAEST: gi|9733674|gb|BE512426.1|BE512426
genomic: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAGgtaagcaatg ... ctgttcctagGTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTGGTGGATATGCA
EST: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAG GTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTEST: gi|9733421|gb|BE512278.1|BE512278
genomic: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAGgtaagcaatg ... ctgttcctagGTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACT
EST: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAG GTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTGGTGGATATGCAEST: gi|211207933|gb|FK975839.1|FK975839
genomic: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAGgtaagcaatg ... ctgttcctagGTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTGGTGGATATGCA
EST: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAG GTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTGGTGGATATGCA
genomic: GAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAGgtaagcaatg ... ctgttcctagGTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTGGTGGATATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTCCTCGGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAGgtaagcaatggatatatgcccatgtccaagttaaacgaatactaggctataattgcattagtgatttcctttatttatcaatggttttcattatcgctttgatagctgatgttccacttcgtgcttctataataaatttaccattgttagtctataataaatttaccagtgttgctctgttcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA