1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAAGATGTTGTGGACGACGGAATGTTGAGACTAGCGGCAACCAGAGGTTGGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAGgtgtgacatccttgctgttcactgcccactgttcaggatcgtgaggatgctattgcaatagtagctgatggagaaatggaaatgattttcaaatgatgacag
species | Zea mays |
transcript | GRMZM2G018678_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAG GATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATEST: gi|74236095|gb|DT644009.1|DT644009
genomic: GGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAGgtgtgacatc ... atgatgacagGATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATAT
EST: GGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAG GATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATEST: gi|91871072|gb|EB401227.1|EB401227
genomic: GGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAGgtgtgacatc ... atgatgacagGATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATAT
EST: GGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAG GATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATEST: gi|78075064|gb|DV503498.1|DV503498
genomic: GGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAGgtgtgacatc ... atgatgacagGATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATAT
EST: ACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAG GATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATAT
genomic: ACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAGgtgtgacatc ... atgatgacagGATTGGCAGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGATGTTGTGGACGACGGAATGTTGAGACTAGCGGCAACCAGAGGTTGGGTGCCCGGTGACAGCAGCCCTCCTTTGAGCAAGAGGCTTTCAGCTAAGgtgtgacatccttgctgttcactgcccactgttcaggatcgtgaggatgctattgcaatagtagctgatggagaaatggaaatgattttcaaatgatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT