Sequence
atgc intronic sequence ATGC exonic sequenceCACAAAATCATTCGGGTGGGACATGCATGATTCATTTATGCAACATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttgacgtctgtaaggtctttcctttttatatcctccggtgttgtttactgaaccgttgtagctctgactgaattatgcttgtaaaatgttgactcaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G018508_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g06950.1 (Oryza sativa), 5'ss of exon 8
CACAAAATCATTCGGGTGGGACATGCATGATTCATTTATGCAACATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttgacgtctgtaaggtctttcctttttatatcctccggtgttgtttactgaaccgttgtagctctgactgaattatgcttgtaaaatgttgactcaag--------------------------------------------------------------------------------------------
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CACAAAATCTTTTGGGTGGGACATGCACGATTCATTCATGCAACATGATGTGCAAGAACTAAATAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttgacatctgtaaggtctttcctttt-atgtattc-ggtgttgtttttcgagtagt-gtaactctgactgaattatgcttgtaaatt-ttgattcaagggaactgttgtggagggcacaatacaacaattatttgaagggcatcacatgaattatatcgagtgtatcaatgtggatatgaaatcaactag
upper sequence: GRMZM2G018508_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 6
CACAAAATCATTCGGGTGGGACATGCATGATTCATTTATGCAACATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttgacgtctgtaaggtctttcctttttatatcctccggtgttgtttactgaaccgt-tgtagctctgactgaattatgcttgtaaaatgttgactcaag-
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TACTAAGTCTTTCGGATGGGATACATACGACTCCTTTATGCAACATGATGTTCAGGAGCTCAATCGAGTTCTCTGTGAAAAGTTGGAAGATAAAATGAAGgtatggaaga-attagttctagtcttgttttcttttc---tttcctgagttgcgtcgtatgtgatcttaactttgttgtggttctcacctggcctttcgcag
upper sequence: GRMZM2G018508_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 6
CACAAAATCATTCGGGTGGGACATGCATGATTCATTTATGCAACATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttg-----acgtctgtaaggtctttcctttttatatcctccggt-gttgtttactgaaccgttgtagctctgactgaat-tatgcttgtaaaatgttgactcaag
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CACTAAATCTTTTGGGTGGGACACCTACGACTCTTTTATGCAACATGATGTTCAAGAGCTGAATCGGGTTCTTTGCGAGAAGCTGGAAGACAAAATGAAGgtatggataaatctctgttagctatgtcttctcggttttcaagagtagctgggtacattatgtttactggtgggaatccttctgtgcttttacag------------
upper sequence: GRMZM2G018508_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ18164 (Selaginella moellendorffii), 5'ss of exon 4
CACAAAATCATTCGGGTGGGACATGCATGATTCATTTATGCAACATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttgacgtctgtaaggtctttcctttttatatcctccggtgttgtttactgaaccgttgtagctctgactgaattatgcttgtaaaatgttgactcaag
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GACTAGATCGTTTGGTTGGGATACGTACGATTCGTTTATGCAGCATGATGTGCAAGAATTGAACCGTGTTTTGTGCGAGAAGCTGGAGGATAAGATGAAGgtttactgc---tattttcttcacgttaaatgttttctaacaccaa--gctccactacag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|50332270|gb|CO527396.1|CO527396EST: TTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAG GGAACTGTTGTAGAGGGCACAATACAACAATTGTTTGAAGGGCACCACATG
genomic: TTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttgacgtc ... ttgactcaagGGAACTGTTGTAGAGGGCACAATACAACAATTGTTTGAAGGGCACCACATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAAAATCATTCGGGTGGGACATGCATGATTCATTTATGCAACATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGgtttgacgtctgtaaggtctttcctttttatatcctccggtgttgtttactgaaccgttgtagctctgactgaattatgcttgtaaaatgttgactcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG