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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAGgtattttactgtgataatcaggccttttttctatgtaacatgctttgtcatgtcactaaacatgcagtgtgctcgctttttttacttacaatacctacgt...

Basic information

species Zea mays
transcript GRMZM2G018048_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018048_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G36660.1 (Glycine max), 5'ss of exon 16
GCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAGgtattt-tactgtgataatcaggccttttttc-tatgtaacatgctttgtcatgtcactaaacatgcag-tgtgctcgctttttttacttacaatacctacgt
|| ||||||||||| || |||||||||||||  |||||||| || |||| ||| || |||||||  |   | || ||||||||| |  || | |||||  ||    |  || |  || ||  |    |  |   ||  |   |||    |   |  ||  |  |  |  | ||||| | |    
GCTCTTGTTGTCCTGGTGCATGATATGGGTCCGAACTGGGAGCTTGTTAATGATGCCATCAACAGTACTATACAATTCAAGgtaatgataatatgatatgcatatataattacacatataggaaaggtgctatggttgcaggacagaaggacatcttcaatgatagttgtcacaatccatc---

upper sequence: GRMZM2G018048_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G46710.1 (Glycine max), 5'ss of exon 19
GCACTTGTTGTCCTTGTCCATGATATGGGTCAAAACTGGGAACTAGTTAGTGACGCAATCAACAACATCGTGCAGTTCAAGgtattttactgtgataatcaggccttttttctatgtaacatgctttgtcatgtcactaaacatgcag-tgtgctcgctttttttacttacaat-acctacgt----
|| ||||||||||| || ||||||||||||| ||||||||| || |||||||| || |||||||  |   | || |||||||||   |  | ||   ||           | || | ||  |||| |     ||  ||  |||    |   |  ||  |  |  |  | ||||| |     ||    
GCTCTTGTTGTCCTGGTGCATGATATGGGTCCAAACTGGGAGCTTGTTAGTGATGCTATCAACAGTACTATACAATTCAAGgtaa--tgatatgcagatataattacacatataggaaaggtgctata----gttgctggacagaaggacatcttcaatgatagttgtcacaattaggggtgtaatt