1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCAAATAGGGTTGCAGTAGTGGTGGCAAATGAGTGGAAAGATGGCGATGATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaatatatcttttcttctagttttaagctgctaccgagttgctcgtggtagatttgtacaagttcttcagcggtgaattttattgatttgttgaatattgtctttttttgcag
species | Zea mays |
transcript | GRMZM2G017525_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAA GGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGTTTAAAGGGCTGTAEST: gi|18660383|gb|BM500833.1|BM500833
genomic: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaa ... ttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCA
EST: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAA GGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCAEST: gi|23199547|gb|BU582112.1|BU582112
genomic: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaa ... ttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCA
EST: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAA GGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCAEST: gi|67023844|gb|CO452593.1|CO452593
genomic: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaa ... ttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCA
EST: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAA GGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCAEST: gi|22521576|gb|BU080387.1|BU080387
genomic: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaa ... ttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCA
EST: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAA GGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCAEST: gi|24765000|gb|CA400161.1|CA400161
genomic: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaa ... ttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCA
EST: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAA GGAGAAATGCAGCAACTCCGGGACAAACTTGCTAEST: gi|6859889|gb|AW355883.1|AW355883
genomic: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaa ... ttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTA
EST: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAA GGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCA
genomic: ATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaa ... ttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAATAGGGTTGCAGTAGTGGTGGCAAATGAGTGGAAAGATGGCGATGATAAAGTAATGCCTGTTAAACGATGGCTCGAGGAGCGAAGGATTCTGCAAgtaagtgaaatatatcttttcttctagttttaagctgctaccgagttgctcgtggtagatttgtacaagttcttcagcggtgaattttattgatttgttgaatattgtctttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG