1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAACTGTCAAAGAAGAAGAAGAAAGGGAAGCTCCCCAAGGAGGCTCGCCAGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttctttttattcttccattttaactattgttggtgacacatgatttagacgatgccaattcttcatgaacttttcatagccagctacccaatg...
species | Zea mays |
transcript | GRMZM2G017087_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|29544842|gb|CB605450.1|CB605450
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|91052571|gb|EB162989.1|EB162989
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|71313265|gb|DR793161.1|DR793161
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|20336942|gb|BQ172572.1|BQ172572
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: GCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|71770872|gb|DR968809.1|DR968809
genomic: GCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|76923266|gb|DV169401.1|DV169401
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|5018263|gb|AI714456.1|AI714456
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: GTGGGATCAGCACTCCAAATGGCCTTACCCCTCA NAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|31911208|gb|CD651809.1|CD651809
genomic: GTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|148943978|gb|EC889059.2|EC889059
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA AAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|50334849|gb|CO529975.1|CO529975
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60351132|gb|DN218105.1|DN218105
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|29544136|gb|CB604516.1|CB604516
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60350722|gb|DN217695.1|DN217695
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|78545017|gb|DV622515.1|DV622515
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60350319|gb|DN217292.1|DN217292
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60341875|gb|DN208848.1|DN208848
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|4804098|gb|AI665964.1|AI665964
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: CAAATGGCCTTA-CCCTCA -AGACTCAGAAGGTGGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAEST: gi|22542334|gb|BU092787.1|BU092787
genomic: CAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGT-GGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCA
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|50332684|gb|CO527810.1|CO527810
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|74236767|gb|DT644681.1|DT644681
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|5468813|gb|AI834604.1|AI834604
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTA-CTGGTGGGATCAGC-CTACAAATGGCCTT-CCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|9732390|gb|BE511142.1|BE511142
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|37384926|gb|CF629568.1|CF629568
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60344228|gb|DN211201.1|DN211201
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60338293|gb|DN205266.1|DN205266
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|18178289|gb|BM379499.1|BM379499
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: GGATCAGCACTACAAATGGCCTTA-CCCTNCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAEST: gi|4938760|gb|AI691173.1|AI691173
genomic: GGATCAGCACTACAAATGGCCTTACCCCT-CAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCA
EST: TGGTGGGTTCAGCACTACAAATGCCCTTACCCCTCA NAGACTCAGAAGGTGGCNCTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|211385211|gb|FK954743.1|FK954743
genomic: TGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: GGGATCAGCACTACAAATGGCCTTACCCCTCA NAGACTCANAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60396431|gb|DN229300.1|DN229300
genomic: GGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|76019795|gb|DT946965.1|DT946965
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|211420637|gb|FL480902.1|FL480902
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|71760196|gb|DR958133.1|DR958133
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60357332|gb|DN224305.1|DN224305
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|22521286|gb|BU080097.1|BU080097
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCTTTTGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60343954|gb|DN210927.1|DN210927
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|50326875|gb|CO522001.1|CO522001
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGEST: gi|60357235|gb|DN224208.1|DN224208
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACTGTCAAAGAAGAAGAAGAAAGGGAAGCTCCCCAAGGAGGCTCGCCAGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttctttttattcttccattttaactattgttggtgacacatgatttagacgatgccaattcttcatgaacttttcatagccagctacccaatg
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG