1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgcttggcttattttctgtgctcatattttgttgtatcaagtgctcaaatgctgtattaagttgcctcaaatagaactgaatttgaaatgcgctctgcag
species | Zea mays |
transcript | GRMZM2G017086_T05 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|211354449|gb|FK991826.1|FK991826
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|211085323|gb|FL409653.1|FL409653
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|211354448|gb|FK991825.1|FK991825
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|241994792|gb|GR421145.1|GR421145
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|211536230|gb|FL396283.1|FL396283
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|32935100|gb|CF039912.1|CF039912
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|31998167|gb|CD661962.1|CD661962
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|13237239|gb|BG355253.1|BG355253
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCGEST: gi|33094903|gb|CF054897.1|CF054897
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
EST: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT GGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
genomic: GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgct ... cgctctgcagGGCCAAAAGTTGATGATGATAGGCACGGCTGATGAGATTGTGAAAGCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGATgtgagatgcttggcttattttctgtgctcatattttgttgtatcaagtgctcaaatgctgtattaagttgcctcaaatagaactgaatttgaaatgcgctctgcag
- - - GCAGAT