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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattccaggcactggaacttttcagtttccttgaaaaagaaatttatatatctattgttttgtgttctttatttgcctgaagcctacattttcac...

Basic information

species Zea mays
transcript GRMZM2G016817_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016817_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g34640.1 (Oryza sativa), 5'ss of exon 3
AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattcca-ggcactggaacttttcagtttccttgaaaaagaaatttatata--tctattgttttgtgttctttatttgcctgaagcctacattttcac--
|||| || ||||||||  |||||||||||||||| ||| | ||| |||| |||||||| || || || ||||| || |||||||| ||||||||||||||||||  |||| | |    |  |||||||   | |    ||||||   ||  || ||  || ||  |||| | ||   |   |   ||  |  | ||  | ||   
AGAAAGACTGGTTGGCACTAGTTGCTGTCCACAGTGATTCATGGCTACTGGCTGTTGCGTTTTATTTCGCAGCACGATTTGGGTTCGACAAAGAGGCCAGgtaa--attcaatgattatcaaactttt---tcttgcagaaaaatgtatggatgtagctccatgtttttttattggatgcatttatgtggatttcagctacaatt

upper sequence: GRMZM2G016817_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv12s0035g01980.t01 (Vitis vinifera), 5'ss of exon 3
AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattccagg-----cactggaacttttcagtttccttgaaaaagaaatttatatatctattgttttgtgttctttatttgcctgaagcctacattttcac
|||| || |||||  |  | |||||||| ||||| ||| | ||||| || |||||||||||||| ||||  ||||| ||||||||||  ||    |  |||||||  ||   ||     ||||| |||||| | || |   | ||    ||||||    |  | || |||||||     |  | |        || || ||    
AGAAAGACTGGTTATCACTGGTTGCTGTGCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCCCGCTTTGGGTTTGGTAAGAGTGAAAGgtaacactttttggaacttcactgaaactttcctgtctttctcaatgtcaaattt---caaatgtttttttgtgagtcatggtggtgaagtatctccagttct--

upper sequence: GRMZM2G016817_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S97_167V6.2 (Physcomitrella patens), 5'ss of exon 3
------AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaac--gattccaggcactggaacttttcagtttccttgaaaaagaaatttat-atatctattgttttgtgttctttatttgcctgaagcctacattttcac
        || || ||| |  | ||||||||||| ||||| ||||||||| |||| |||||||| ||||| |  | ||| |||||||  |  ||   ||||| | | || |   | |  |   | ||   ||| |   ||   ||    | ||  | |   | | | |||  | | |  | |  | |||    |   ||||||      
TGCAGCGTAAAGACTGGCTTTCTTTAGTTGCTGTGCACAGTGATGCCTGGCTACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGA-TAAGAACGAGAGgtctgctatctgaacttgatataatgctgcttcttttttgtatttttgacgagttatgccacacccattcatgtattatttccaattga--aattactacat------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211450061|gb|FL055705.1|FL055705
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTT
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTT
EST: gi|211447942|gb|FL055689.1|FL055689
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTTCAACATGATA
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTT-CAACATGATA
EST: gi|18963781|gb|BM660626.1|BM660626
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211445815|gb|FL055672.1|FL055672
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTTCAACATGATAAAT
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTT-CAACATGATAAAT
EST: gi|33090954|gb|CF050948.1|CF050948
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211447949|gb|FL055696.1|FL055696
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATA
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATA
EST: gi|211450062|gb|FL055706.1|FL055706
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTA
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTA
EST: gi|69351460|gb|DR452142.1|DR452142
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAATGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|32838714|gb|CD978395.1|CD978395
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211443698|gb|FL055660.1|FL055660
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211445824|gb|FL055681.1|FL055681
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAAT
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAAT
EST: gi|211450059|gb|FL055703.1|FL055703
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTTCA-CATGATAAATAACTTGCCCACAATATTTGAAGTAG
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTT-CAACATGATAAATAACTTGCCCACAATATTTGAAGTAG
EST: gi|211447945|gb|FL055692.1|FL055692
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211443706|gb|FL055668.1|FL055668
EST:     GCTGT-GCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCSACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211443699|gb|FL055661.1|FL055661
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211443701|gb|FL055663.1|FL055663
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTYTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCA
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCA
EST: gi|20300963|gb|BQ163906.1|BQ163906
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|32838581|gb|CD978259.1|CD978259
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211445814|gb|FL055671.1|FL055671
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGCTTGGGTTTGACAAAGAG-CCAG                         GCGGCGACTCTTCA-CATGATAAATA-CTTGCCCACA-TATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211447946|gb|FL055693.1|FL055693
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAAATAACTTGCCCCCACATATT-GAAGTA
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAA-TAACTTGCCCACA-ATATTTGAAGTA
EST: gi|67015263|gb|CO444012.1|CO444012
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211445823|gb|FL055680.1|FL055680
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211443705|gb|FL055667.1|FL055667
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATAT
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATAT
EST: gi|211450060|gb|FL055704.1|FL055704
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|20301050|gb|BQ163993.1|BQ163993
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211443697|gb|FL055659.1|FL055659
EST:     CTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTTGACAAAGAGGCCAG                         GCGGCGACTCT-CTAACATGATAAATAACTTG
genomic: CTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTT-GACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTC-AACATGATAAATAACTTG
EST: gi|211447944|gb|FL055691.1|FL055691
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211447939|gb|FL055686.1|FL055686
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAKAGGCCAK                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211445826|gb|FL055683.1|FL055683
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|211447951|gb|FL055698.1|FL055698
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGARGCCAG                         GTGGCGACTCTTCAACATGATAAAT
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAAT
EST: gi|211445817|gb|FL055674.1|FL055674
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATA
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATA
EST: gi|211450057|gb|FL055701.1|FL055701
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTT
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTT
EST: gi|211445821|gb|FL055678.1|FL055678
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTCTGACAAAGAGGCCAG                         GCGGCGACTCTTC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTC
EST: gi|20301051|gb|BQ163994.1|BQ163994
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|20301070|gb|BQ164013.1|BQ164013
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTTTTCAACATGATAAATAACTTGCC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCC
EST: gi|60350291|gb|DN217264.1|DN217264
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: gi|32837497|gb|CD977175.1|CD977175
EST:     GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG                         GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 368

AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 184

AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 216

AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 194

AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattccaggcactggaacttttcagtttccttgaaaaagaaatttatatatctattgttttgtgttctttatttgcctgaagcctacattttcac

- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa