Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatctctaatatgctctgcagattcagttgctgccacttatgtgcatgtttcagttgactgttccccttgttacttttggacaaacttctttcag

Basic information

species Zea mays
transcript GRMZM2G016106_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g45240.4 (Oryza sativa), 5'ss of exon 3
GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatctctaatatgctctgcagattcagttgctgccacttatgtgcat-gtttcagttgactgttccccttgttacttttggacaaacttctttcag
|||||| |||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||| | |||| |||||| ||||| |||||||||||| |         | | |  |   |||| || |||||| |  |  || | ||||  ||  |||| | || || ||||||||| |||    | || |||
GTTGTTCGAGATAAGAGAACTGGCAAAACAAAAGGATATGGATTTGTGAGCTTTTCAAACCCTACTGACCTTGCTGGAGCAATTAAAGAAATGAATGgtttgaa--------gtacccaacttgttcaattactgccattgttcagcttcgtttttgt--actgctacc-ttattacttttg-aca---ctattgcag

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 4
GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatctctaatatgctctgcagattcagttgctgccactta-tgtgcatgtttcagttgactgttccccttgttacttttggacaaacttctttcag--
||||| ||||| ||| ||||||| || || |||||||||||||||||||||||| | || ||| ||||| | ||||  ||  | ||||| |||||||||| ||   |  |  |||  |  |   || |  |  | |    || |||  |  |     |||||| || | ||    | | |  |  |  |||||  |    
GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGGTGCTCTTAAAGAAATGAATGgttagtcagttcag-atgggcctctcttttaagtattactctgtaatgtctaaatacatattgactattactct--gcaatatctgttactcttctgactagt

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 4
GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatctctaatatgctctgcagattcagttgctgccactta-tgtgcatgtttcagttgactgttccccttgttacttttggacaaacttctttcag--
||||| ||||| ||| ||||||| || || |||||||||||||||||||||||| | || ||| ||||| | ||||| ||  | ||||| |||||||||| ||   |  |  |||  |  |   || |  |  | |    || |||  |  |     |||||| || | ||   || | |  |  |  |||||  |    
GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGgttagtcagttcag-atgggcctctcttttaagtattactctgtaatgtctaaatacatattgactattacgct--gtaatatctgttactcttctgactagt

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G01300.1 (Glycine max), 5'ss of exon 4
GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatctctaatatgctctgcagattcagttgctgccacttatgtgcatgtttcagttgactgttccccttgttacttt---tggacaaacttctttcag
||||| ||||||||  ||||||| || || |||||||||||||||||||||||| | || ||| ||||| | ||||| ||  | ||||| |||||||||| |||  |     |||  || |   || |     | |    || |||  |   |   || | | ||     |  | ||||   |    | |  | ||| | 
GTTGTCAGAGATAAACGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATGgttagtaagttcgg-atgggcttctcttttaagcattactctgta-gtgtctaagtacatttagtcttgtgactagtgctttgattcagtatagatatttta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284046|gb|DV023614.1|DV023614
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|50322655|gb|CO517781.1|CO517781
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|148955971|gb|EC901692.2|EC901692
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCCTAT-AAATTGCGTAAGAGTAACTGGAAG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCC-TATTAAATTGCGTAAGAGTAACTGGAAG
EST: gi|50322967|gb|CO518093.1|CO518093
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTG
EST: gi|71299286|gb|DR785657.1|DR785657
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|67016497|gb|CO445246.1|CO445246
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|71307240|gb|DR789787.1|DR789787
EST:     GAGCTTTTCAANCCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAAT-GCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|78087828|gb|DV516221.1|DV516221
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|33100465|gb|CF060425.1|CF060425
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|50322656|gb|CO517782.1|CO517782
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|149070600|gb|EE159005.2|EE159005
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|71307238|gb|DR789786.1|DR789786
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|78081954|gb|DV510366.1|DV510366
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|31355235|gb|CD439592.1|CD439592
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|71434198|gb|DR815248.1|DR815248
EST:     AGCTTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: AGC-TTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|76021667|gb|DT948837.1|DT948837
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGGAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|5456392|gb|AI834082.1|AI834082
EST:     AGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: AGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|149070599|gb|EE159004.2|EE159004
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|78025573|gb|DV493960.1|DV493960
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|148962986|gb|EE013934.2|EE013934
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGA
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGA
EST: gi|67022274|gb|CO451023.1|CO451023
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|148954322|gb|EC899733.2|EC899733
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGGATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|166452174|gb|EG162260.1|EG162260
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAG
EST: gi|91051021|gb|EB161439.1|EB161439
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCCGCCCTATTAATTTGCGT
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATC-GCCCTATTAAATTGCGT
EST: gi|60353708|gb|DN220681.1|DN220681
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|60354882|gb|DN221855.1|DN221855
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|211288995|gb|FL439217.1|FL439217
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|148928375|gb|EE285065.2|EE285065
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|71435061|gb|DR816111.1|DR816111
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|76021666|gb|DT948836.1|DT948836
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|211170506|gb|FL450584.1|FL450584
EST:     AGCTTTTCAAACCCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: AGCTTTTCAAA-CCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|76284045|gb|DV023613.1|DV023613
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|148930497|gb|EE285066.2|EE285066
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTGGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGGAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|16921229|gb|BM075048.1|BM075048
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|148954321|gb|EC899732.2|EC899732
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|71299288|gb|DR785658.1|DR785658
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|4967150|gb|AI691865.1|AI691865
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|93015051|gb|EB640571.1|EB640571
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|71763302|gb|DR961239.1|DR961239
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|78087827|gb|DV516220.1|DV516220
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|71449013|gb|DR830063.1|DR830063
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|5124136|gb|AI745760.1|AI745760
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGG
EST: gi|148982967|gb|EE028858.2|EE028858
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCGGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAA
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAA
EST: gi|60397750|gb|DN230566.1|DN230566
EST:     GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG                         GAAAGTATGTTGGGAATCGCCCTATTAAATTG
genomic: GAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 245

GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGGAGAGGACAGATGTTGAGGCTCTGCAAAGACAAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 99

GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGGAGAGGACAGATGTTGAGGCTCTGCAAAGACAAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 169

GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGGAGAGGACAGATGTTGAGGCTCTGCAAAGACAAAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 139

GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatct ... cttctttcagGAAAGTATGTTGGGAATCGCCCTATTAAATTGCGTAAGAGTAACTGGAAGGAGAGGACAGATGTTGAGGCTCTGCAAAGACAAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATGgtttgtatctctaatatgctctgcagattcagttgctgccacttatgtgcatgtttcagttgactgttccccttgttacttttggacaaacttctttcag

- - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG