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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTATATCTCCATCCAGCAAAGTCCAAGAAGCAGTTGACTGGGCTTTGAAGGGTGTGAATCCAGATATTGTTTTGCACATGCGCATGATGGCGAATAGgtatggcgcactatttgtggatgcttgtgtaaattgaagtaattatatagattgtcccatcagttcaaaaaggaaaactgcagtgtagtagaatattgac...

Basic information

species Zea mays
transcript GRMZM2G015854_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015854_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 4
CTATTATATCTCCATCCAGCAAAGTCCAAGAAGCAGTTGACTGGGCTTTGAAGGGTGTGAATCCAGATATTGTTTTGCACATGCGCATGATGGCGAATAGgtatggcgcactatttgtggatgcttgtgtaaattgaagtaatt-atatagattgtcccatcagttcaaaaaggaaaactgcagtgtagtagaatattgac---------
 ||| |||||||| ||    | |||  || | |||||| | |||||||| ||||||   | ||| |||||||| |||||||||||||||||| | || |||||||  ||||||| |||||         ||||   | | |||  || || |||  | |||   ||  ||||   ||  |    | | ||  ||| |||||         
TTATAATATCTCCTTCACAGACAGTTGAAAAGGCAGTTCAATGGGCTTTAAAGGGTTCCAGTCCTGATATTGTATTGCACATGCGCATGATGACAAACAGgtatgaagcactatctgtgg-------cataaaggaaggaaatagatgtaaatttccacattcatttgaaaacataa--taggatattgtcaaat-ttgacgttgtaaac